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A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Average nTPM
18.8
GTEx sample id
Sample description
nTPM
Brain - Amygdala Average nTPM: 18.8
Samples: 152
Max nTPM: 52.0
Min nTPM: 4.1
Std nTPM: 7.3
Median nTPM: 17.9
GTEX-14JG1-0011-R4b-SM-62LEB
40-49 years, male
52.0
GTEX-1JMQJ-0011-R4b-SM-EXUT8
50-59 years, male
44.4
GTEX-16YQH-0011-R4a-SM-7EPGI
30-39 years, male
42.2
GTEX-R55E-0011-R4A-SM-2TC5H
20-29 years, male
36.2
GTEX-1B8L1-0011-R4a-SM-7EWFJ
60-69 years, male
34.8
GTEX-1F75A-0011-R4a-SM-ARL8J
50-59 years, male
32.7
GTEX-17HG3-0011-R4a-SM-7IGLL
30-39 years, female
32.4
GTEX-Q2AG-0011-R4A-SM-2HMKA
40-49 years, female
31.3
GTEX-1HCU6-0011-R4b-SM-ARU74
60-69 years, female
30.4
GTEX-13N1W-0011-R4a-SM-5MR52
70-79 years, male
30.3
GTEX-17EVP-0011-R4a-SM-79OML
40-49 years, male
29.2
GTEX-14JIY-0011-R4b-SM-5ZZV7
60-69 years, male
29.1
GTEX-1F7RK-0011-R4b-SM-9QEI7
20-29 years, female
28.8
GTEX-13O3O-0011-R4b-SM-5KM3F
60-69 years, female
28.7
GTEX-15SHU-0011-R4b-SM-7IGLC
40-49 years, female
28.5
GTEX-1AX9I-0011-R4b-SM-7EPIB
60-69 years, male
28.0
GTEX-P44G-0011-R4A-SM-2I3FB
30-39 years, male
27.6
GTEX-WZTO-0011-R4A-SM-3NMC7
40-49 years, male
27.6
GTEX-1H3NZ-0011-R4a-SM-CL54T
60-69 years, male
27.3
GTEX-1IY9M-0011-R4a-SM-C1YQ2
60-69 years, male
26.6
GTEX-13O3Q-0011-R4a-SM-5P9H2
50-59 years, male
25.9
GTEX-1GF9W-0011-R4a-SM-CE6RH
60-69 years, male
25.9
GTEX-1313W-0011-R4b-SM-5KLZV
50-59 years, female
25.6
GTEX-1399T-0011-R4b-SM-5DUVX
60-69 years, male
25.6
GTEX-14ASI-0011-R4a-SM-69LQ4
60-69 years, male
24.9
GTEX-1C6WA-0011-R4a-SM-9QEH2
60-69 years, male
24.9
GTEX-1HFI6-0011-R4b-SM-A96RT
40-49 years, male
24.9
GTEX-131XH-0011-R4b-SM-5DUWB
50-59 years, male
24.5
GTEX-13X6J-0011-R4b-SM-5P9K4
50-59 years, male
24.4
GTEX-13OVH-0011-R4a-SM-5KM3W
70-79 years, male
24.2
GTEX-15ER7-0011-R4a-SM-6M46S
20-29 years, female
24.2
GTEX-1E1VI-0011-R4b-SM-9QEHV
50-59 years, male
23.6
GTEX-17EVQ-0011-R4b-SM-7LT94
70-79 years, male
23.4
GTEX-13112-0011-R4b-SM-5DUXL
50-59 years, male
23.1
GTEX-13VXU-0011-R4b-SM-5O9CI
50-59 years, male
22.8
GTEX-RNOR-0011-R4A-SM-3GAD3
50-59 years, female
22.4
GTEX-1HBPH-0011-R4a-SM-A96RX
40-49 years, female
22.1
GTEX-1A3MX-0011-R4b-SM-7EWFK
60-69 years, male
22.0
GTEX-1LVAO-0011-R4a-SM-EXURO
60-69 years, male
22.0
GTEX-131YS-0011-R4a-SM-5DUVL
60-69 years, female
21.8
GTEX-15DDE-0011-R4b-SM-7KULI
50-59 years, female
21.6
GTEX-T5JC-0011-R4A-SM-32PLT
20-29 years, male
21.6
GTEX-13CZV-0011-R4b-SM-5J2NY
60-69 years, male
21.4
GTEX-1JN6P-0011-R4a-SM-EZ6MS
60-69 years, male
21.2
GTEX-12WSD-0011-R4b-SM-5LZUA
60-69 years, female
20.9
GTEX-WVLH-0011-R4A-SM-3MJFS
50-59 years, male
20.9
GTEX-15EO6-0011-R4a-SM-7KUKZ
50-59 years, male
20.3
GTEX-1GN73-0011-R4b-SM-9QEIK
60-69 years, male
20.3
GTEX-Y8DK-0011-R4A-SM-EXUR1
60-69 years, male
20.3
GTEX-WHSE-0011-R4A-SM-3P5ZN
20-29 years, male
20.2
GTEX-1F6IF-0011-R4b-SM-CKZNJ
60-69 years, male
20.1
GTEX-11PRG-0011-R4a-SM-DNZZR
50-59 years, male
20.0
GTEX-ZAB4-0011-R4a-SM-4SOKB
40-49 years, male
19.9
GTEX-1HBPI-0011-R4a-SM-CJI3K
50-59 years, male
19.9
GTEX-15DYW-0011-R4a-SM-6M46V
60-69 years, female
19.8
GTEX-11NUK-0011-R4a-SM-DO12B
50-59 years, male
19.5
GTEX-1GTWX-0011-R4a-SM-C1YQI
60-69 years, male
19.5
GTEX-14BIM-0011-R4b-SM-5S2RK
60-69 years, female
19.4
GTEX-14PJM-0011-R4a-SM-5YYAS
50-59 years, female
19.4
GTEX-1N2EE-0011-R4a-SM-EXOII
60-69 years, male
19.3
GTEX-13SLX-0011-R4a-SM-5O9BJ
50-59 years, female
19.2
GTEX-145LS-0011-R4b-SM-5S2UT
60-69 years, female
19.2
GTEX-1GZ4I-0011-R4a-SM-9QEI9
50-59 years, male
19.2
GTEX-1J8Q2-0011-R4a-SM-ADEHA
60-69 years, male
19.2
GTEX-13OW6-0011-R4a-SM-5O9DX
50-59 years, male
18.9
GTEX-13X6I-0011-R4b-SM-5PNU9
60-69 years, male
18.8
GTEX-XLM4-0011-R4B-SM-4AT5C
60-69 years, male
18.8
GTEX-1B996-0011-R4b-SM-9OSVO
60-69 years, male
18.7
GTEX-18464-0011-R4a-SM-7LG6T
50-59 years, male
18.6
GTEX-S7SE-0011-R4A-SM-2XCDB
50-59 years, male
18.6
GTEX-14PN4-0011-R4a-SM-686ZT
50-59 years, male
18.5
GTEX-13FLV-0011-R4a-SM-5LZYU
50-59 years, male
18.2
GTEX-NL3H-0011-R4a-SM-2I3GK
60-69 years, male
18.2
GTEX-1LSVX-0011-R4b-SM-EXURP
60-69 years, male
18.2
GTEX-12ZZW-0011-R4a-SM-5DUX9
50-59 years, male
18.0
GTEX-ZVZQ-0011-R4b-SM-57WCZ
60-69 years, female
17.9
GTEX-1CB4G-0011-R4b-SM-CJI28
60-69 years, male
17.8
GTEX-YFC4-0011-R4a-SM-4RGLQ
40-49 years, female
17.7
GTEX-1H1DG-0011-R4a-SM-CE6RQ
70-79 years, male
17.7
GTEX-P44H-0011-R4A-SM-2XCEW
40-49 years, male
17.6
GTEX-1H3O1-0011-R4b-SM-A9SKE
60-69 years, male
17.5
GTEX-ZE9C-0011-R4a-SM-4WKH6
60-69 years, male
17.4
GTEX-13NYB-0011-R4b-SM-9QEGJ
40-49 years, male
17.4
GTEX-1JJEA-0011-R4a-SM-EXUTC
60-69 years, male
17.4
GTEX-13OVL-0011-R4b-SM-5L3HV
50-59 years, male
17.2
GTEX-1EMGI-0011-R4b-SM-CJI2D
60-69 years, male
17.2
GTEX-1EX96-0011-R4a-SM-ARU82
50-59 years, male
17.2
GTEX-X4XX-0011-R4B-SM-46MWL
60-69 years, male
16.9
GTEX-1I1GR-0011-R4a-SM-CMKHC
60-69 years, male
16.9
GTEX-13N2G-0011-R4b-SM-5MR54
60-69 years, male
16.8
GTEX-14PQA-0011-R4b-SM-6AJBU
50-59 years, female
16.8
GTEX-1H1CY-0011-R4b-SM-CJI3G
60-69 years, female
16.7
GTEX-1C6VR-0011-R4b-SM-9QEGZ
60-69 years, male
16.6
GTEX-144GL-0011-R4a-SM-5PNUI
50-59 years, male
16.5
GTEX-14E7W-0011-R4b-SM-62LEA
70-79 years, male
16.5
GTEX-13QIC-0011-R4a-SM-5PNX8
60-69 years, female
16.4
GTEX-13JVG-0011-R4a-SM-5MR4C
60-69 years, male
16.3
GTEX-13X6K-0011-R4b-SM-5P9HO
60-69 years, female
16.2
GTEX-14ABY-0011-R4b-SM-5S2VN
50-59 years, male
16.2
GTEX-13RTJ-0011-R4b-SM-5PNX1
60-69 years, male
16.1
GTEX-QVJO-0011-R4A-SM-2S1QL
60-69 years, female
15.9
GTEX-1F48J-0011-R4b-SM-9OSVX
50-59 years, female
15.8
GTEX-12WSF-0011-R4b-SM-5HL88
70-79 years, male
15.7
GTEX-12ZZZ-0011-R4b-SM-5DUV7
60-69 years, male
15.7
GTEX-13PVQ-0011-R4a-SM-5O9CT
50-59 years, male
15.5
GTEX-11ZU8-0011-R4a-SM-5BC6Y
60-69 years, male
14.7
GTEX-TSE9-0011-R4A-SM-3DB7H
60-69 years, female
14.7
GTEX-1GMR8-0011-R4a-SM-9OSX1
50-59 years, female
14.6
GTEX-12WSH-0011-R4a-SM-5GU6K
50-59 years, male
14.5
GTEX-13OW5-0011-R4b-SM-5L3HS
60-69 years, male
14.5
GTEX-1J1OQ-0011-R4a-SM-D4P2A
40-49 years, female
14.5
GTEX-14DAQ-0011-R4a-SM-5YYAI
60-69 years, female
14.3
GTEX-1H23P-0011-R4b-SM-CL54R
60-69 years, male
14.3
GTEX-NL4W-0011-R4a-SM-2I5GZ
50-59 years, male
14.0
GTEX-11ONC-0011-R4b-SM-DO93H
60-69 years, male
14.0
GTEX-139T8-0011-R4a-SM-5HL54
60-69 years, male
13.9
GTEX-1ICLZ-0011-R4a-SM-CMKHL
60-69 years, male
13.8
GTEX-13OW7-0011-R4b-SM-5O9CX
50-59 years, male
13.5
GTEX-N7MT-0011-R4a-SM-2I3G9
60-69 years, female
13.5
GTEX-13NYS-0011-R4b-SM-5MR3O
60-69 years, male
13.4
GTEX-1HB9E-0011-R4b-SM-ARZLS
50-59 years, male
13.4
GTEX-ZAK1-0011-R4a-SM-6AJBK
50-59 years, female
13.1
GTEX-14JFF-0011-R4a-SM-5ZZV5
60-69 years, male
13.1
GTEX-15DCD-0011-R4a-SM-69LPB
70-79 years, female
12.9
GTEX-X585-0011-R4B-SM-46MVH
50-59 years, male
12.8
GTEX-17F97-0011-R4b-SM-7KFS2
50-59 years, male
12.7
GTEX-183WM-0011-R4a-SM-7LG6S
70-79 years, female
12.2
GTEX-15CHQ-0011-R4a-SM-686ZX
60-69 years, male
12.1
GTEX-12WSA-0011-R4a-SM-57WB7
60-69 years, male
12.0
GTEX-NPJ8-0011-R4a-SM-2HML3
40-49 years, male
11.8
GTEX-NPJ7-0011-R4a-SM-2I3GJ
60-69 years, female
11.6
GTEX-1J8EW-0011-R4b-SM-ARU89
60-69 years, female
11.6
GTEX-1H1ZS-0011-R4b-SM-CKZO7
70-79 years, male
11.4
GTEX-1445S-0011-R4a-SM-5PNWN
60-69 years, male
11.0
GTEX-1H2FU-0011-R4a-SM-CL551
60-69 years, female
11.0
GTEX-147GR-0011-R4a-SM-5S2V2
60-69 years, male
10.9
GTEX-N7MS-0011-R4a-SM-2HMKW
60-69 years, male
10.4
GTEX-13OW8-0011-R4a-SM-9WG6V
60-69 years, male
10.2
GTEX-OHPN-0011-R4A-SM-2I5FD
60-69 years, female
9.5
GTEX-QDT8-0011-R4A-SM-32PKM
30-39 years, female
9.4
GTEX-13SLW-0011-R4b-SM-5S2W2
70-79 years, male
9.1
GTEX-QVUS-0011-R4A-SM-3GAE7
60-69 years, female
9.1
GTEX-11ZVC-0011-R4a-SM-5BC6Z
50-59 years, female
8.7
GTEX-UTHO-0011-R4A-SM-3GIJP
60-69 years, male
8.7
GTEX-1N2DW-0011-R4b-SM-EZ6MD
50-59 years, male
8.4
GTEX-T6MN-0011-R4A-SM-32QPG
50-59 years, male
8.0
GTEX-11TTK-0011-R4a-SM-DNZZU
60-69 years, female
8.0
GTEX-1CB4J-0011-R4b-SM-9WG5P
60-69 years, male
8.0
GTEX-13OVJ-0011-R4b-SM-5P9H5
50-59 years, female
7.2
GTEX-145MI-0011-R4b-SM-5PNZH
60-69 years, female
5.6
GTEX-QMR6-0011-R4A-SM-32PKU
50-59 years, male
5.5
GTEX-X4EP-0011-R4B-SM-3P627
60-69 years, female
4.1
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AMYGDALA - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Average nTPM
52.6
Mouse sample
Sample description
nTPM
Amygdala nTPM: 52.6
Samples: 4
Max nTPM: 55.1
Min nTPM: 49.7
Sample A
Male
51.4
Sample B
Male
54.2
Sample C
Female
49.7
Sample D
Female
55.1
AMYGDALA - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
The Human Protein Atlas project is funded
