HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Not detected
Neuronal cells: Medium
Mouse brain, Intensity
Hippocampal formationi 		24.949
RNA expressioni
Consensus:20.6 nTPM
HPA Brain:42.7 nTPM
GTEx:20.6 nTPM
FANTOM5:19.7 Scaled Tags Per Million
Pig:33.1 nTPM
Mouse:44.2 nTPM
Allen mouse:9.9 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA049148
Glial cells Not detected
Neuronal cells Medium

HIPPOCAMPAL FORMATION - Mouse brain profilei , antibody HPA049148
Hippocampal formation mean intensity 24.949
intensityi
FRONT BACK
Polymorph layer of the dentate gyrus 2.290
Molecular layer of the dentate gyrus 1.440
Granular dentate gyrus 24.949
CA1 - oriens layer 1.167
CA1 - pyramidal layer 11.186
CA1 - radiatum layer 1.006
CA2 - oriens layer 1.300
CA2 - pyramidal layer 11.667
CA2 - radiatum layer 0.500
CA3 - oriens layer 2.027
CA3 - pyramidal layer 8.081
CA3 - radiatum layer 1.167
Stratum lucidum 2.128
Lacunosum moleculare 0.671
Subiculum 8.838

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 42.7
Sample id Sample description nTPM
Hippocampus
nTPM: 30.4
2621 Female, age 67, right hemisphere 39.1
1911 Female, age 85, right hemisphere 31.6
2148 Female, age 91, left hemisphere 30.8
1898 Male, age 80, left hemisphere 29.8
2529 Female, age 94, left hemisphere 27.5
1855 Male, age 76, left hemisphere 23.4
Dentate gyrus
nTPM: 31.4
2531 Female, age 67, both hemispheres 46.9
1927 Female, age 91, both hemispheres 33.1
2246 Female, age 85, both hemispheres 33.1
2530 Female, age 94, left hemisphere 26.7
2010 Male, age 76, both hemispheres 26.6
2528 Male, age 74, both hemispheres 21.7
Entorhinal gyrus
nTPM: 33.6
2686 Male, age 75, right hemisphere 44.2
2764 Male, age 80, right hemisphere 41.6
1938 Female, age 85, left hemisphere 34.5
2613 Female, age 94, left hemisphere 33.3
1787 Male, age 76, left hemisphere 29.2
2117 Female, age 91, right hemisphere 18.6
Hippocampus, CA1
nTPM: 36.8
2749 Male, age 80, left hemisphere 64.0
2045 Male, age 76, both hemispheres 34.4
1873 Female, age 85, both hemispheres 32.3
2527 Male, age 74, both hemispheres 29.6
2082 Female, age 91, right hemisphere 23.6
Hippocampus, CA2
nTPM: 26.5
1892 Male, age 76, both hemispheres 37.1
1963 Male, age 80, left hemisphere 28.4
2437 Female, age 94, left hemisphere 26.9
2249 Male, age 74, both hemispheres 24.2
2113 Female, age 91, right hemisphere 22.5
1940 Female, age 85, left hemisphere 20.0
Hippocampus, CA3
nTPM: 42.7
2137 Male, age 80, left hemisphere 63.0
2620 Female, age 94, left hemisphere 61.1
2861 Female, age 67, both hemispheres 50.9
1867 Male, age 76, both hemispheres 37.1
1891 Female, age 85, both hemispheres 25.5
2436 Male, age 74, both hemispheres 18.4
Parahippocampal cortex
nTPM: 35.2
2622 Female, age 67, right hemisphere 45.8
2245 Female, age 91, both hemispheres 41.8
2693 Female, age 94, both hemispheres 39.0
2532 Female, age 72, left hemisphere 38.1
1850 Male, age 80, both hemispheres 36.4
1933 Female, age 85, both hemispheres 35.3
2250 Female, age 67, right hemisphere 33.6
1990 Female, age 91, right hemisphere 28.3
2692 Male, age 74, both hemispheres 28.2
2018 Male, age 76, both hemispheres 25.4
Perirhinal gyrus
nTPM: 35.0
1794 Male, age 80, right hemisphere 39.5
1841 Female, age 85, right hemisphere 37.6
2848 Male, age 76, right hemisphere 34.2
1847 Female, age 91, left hemisphere 32.1
2521 Female, age 94, right hemisphere 31.8
Subiculum
nTPM: 27.7
1901 Male, age 80, both hemispheres 37.5
1977 Female, age 85, both hemispheres 29.9
2438 Female, age 94, left hemisphere 26.6
2619 Male, age 74, both hemispheres 25.9
2042 Male, age 76, both hemispheres 23.6
2729 Female, age 91, right hemisphere 23.0

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 20.6
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 20.6
Samples: 197

Max nTPM: 52.8
Min nTPM: 3.3
Std nTPM: 9.8
Median nTPM: 20.7
GTEX-14PN4-0011-R1b-SM-69LP8 50-59 years, male 52.8
GTEX-145MH-0011-R1b-SM-5PNWY 50-59 years, male 50.5
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 49.3
GTEX-1IOXB-0011-R1a-SM-D4P27 50-59 years, male 46.6
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 43.4
GTEX-1F75A-0011-R1b-SM-CE6RA 50-59 years, male 42.6
GTEX-12WSE-0011-R1b-SM-5GU4V 20-29 years, male 42.4
GTEX-RNOR-0011-R1A-SM-CNNP5 50-59 years, female 42.1
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 41.8
GTEX-WL46-0011-R1A-SM-3LK6M 50-59 years, male 41.8
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 40.8
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 19.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 19.7
FF:10169-103B7 60 years, female 25.9
FF:10153-102I9 76 years, female 13.5

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 33.1
Pig sample Sample description nTPM
Subiculum
nTPM: 33.2
Samples: 4

Max nTPM: 42.3
Min nTPM: 28.2
Sample A Female 42.3
Sample B Female 29.2
Sample C Male 33.0
Sample D Male 28.2
Dorsal hippocampus
nTPM: 28.2
Samples: 4

Max nTPM: 34.3
Min nTPM: 19.4
Sample A Female 33.5
Sample B Female 34.3
Sample C Male 25.4
Sample D Male 19.4
Entorhinal cortex
nTPM: 32.3
Samples: 4

Max nTPM: 38.7
Min nTPM: 27.0
Sample A Female 38.7
Sample B Female 27.0
Sample C Male 34.1
Sample D Male 29.2
Ventral hippocampus
nTPM: 32.1
Samples: 4

Max nTPM: 40.5
Min nTPM: 25.8
Sample A Female 30.1
Sample B Female 25.8
Sample C Male 40.5
Sample D Male 31.9

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 44.2
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 43.4
Samples: 4

Max nTPM: 47.2
Min nTPM: 38.4
Sample A Male 38.4
Sample B Male 43.3
Sample C Female 44.8
Sample D Female 47.2
Hippocampal formation
nTPM: 44.2
Samples: 4

Max nTPM: 47.0
Min nTPM: 40.2
Sample A Male 44.4
Sample B Male 45.1
Sample C Female 40.2
Sample D Female 47.0

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 9.9
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 9.9
69104136 Antisense, RP_050316_02_B01, Mouse strain C57BL/6J (56 days, male) 9.9

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