We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
CAPN1
SECTIONS
  • TISSUE
  • BRAIN
  • SINGLE CELL TYPE
  • TISSUE CELL TYPE
  • PATHOLOGY
  • DISEASE
  • IMMUNE CELL
  • BLOOD PROTEIN
  • SUBCELLULAR
  • CELL LINE
  • STRUCTURE
  • INTERACTION
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
  • SARS-COV-2
HELP
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • HELP & FAQ
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Class
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Patient ID
Tissue
Category
Cluster
Reliability
Brain region
Category
Brain region
Category
Brain region
Category
Cluster
Reliability
Cell type
Category
Cluster
Tissue
Cell type
Enrichment
Cancer
Prognosis
Cancer
Category
Cell type
Category
Cell lineage
Category
Cluster
Annotation
Disease
Location
Searches
Location
Cell line
Type
Phase
Reliability
Cancer type
Category
Cluster
Interacting gene
Number of interactions
Pathway
Category
Score
Score
Score
Validation
Validation
Validation
Validation
Antibodies
Protein structure
In atlas
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • TISSUE CELL

  • PATHOLOGY

  • DISEASE

  • IMMUNE

  • BLOOD

  • SUBCELL

  • CELL LINE

  • STRUCTURE

  • INTERACTION

  • CAPN1
IMMUNE CELL MONOCYTES Show tissue menu
B-CELLS DENDRITIC CELLS GRANULOCYTES MONOCYTES NK-CELLS PROGENITORS T-CELLS TOTAL PBMC
Immune cell proteome
Monocytes
MONOCYTES - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
HPA:57.6 nTPM
Monaco:238.6 nTPM
Schmiedel:53.7 TPM

MONOCYTES - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max nTPM 57.6
HPA sample nTPM
Classical monocyte
nTPM: 57.6
Samples: 6

Max nTPM: 131.3
Min nTPM: 26.1
P10809_1003 131.3
P10809_1020 47.5
P10809_1039 26.1
P10809_1058 38.8
P10809_1080 49.3
P10809_1107 52.3
Intermediate monocyte
nTPM: 51.2
Samples: 6

Max nTPM: 78.3
Min nTPM: 32.0
P10809_1004 78.3
P10809_1023 53.3
P10809_1042 52.6
P10809_1061 41.9
P10809_1081 32.0
P10809_1108 48.9
Non-classical monocyte
nTPM: 30.5
Samples: 5

Max nTPM: 76.6
Min nTPM: 0.2
P10809_1005 76.6
P10809_1053 30.8
P10809_1072 0.2
P10809_1082 20.1
P10809_1109 24.7

MONOCYTES - Monaco RNA-seqi

RNA-Seq data generated by Monaco et al is reported as average nTPM.

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max nTPM 238.6
Monaco sample nTPM
Classical monocyte
nTPM: 238.6
Samples: 4

Max nTPM: 253.3
Min nTPM: 210.7
RHH5313_R3680 247.1
RHH5221_R3593 253.3
RHH5250_R3622 243.4
RHH5279_R3651 210.7
Intermediate monocyte
nTPM: 195.5
Samples: 4

Max nTPM: 275.8
Min nTPM: 151.3
RHH5314_R3681 197.1
RHH5222_R3594 275.8
RHH5251_R3623 151.3
RHH5280_R3652 157.9
Non-classical monocyte
nTPM: 147.9
Samples: 4

Max nTPM: 155.1
Min nTPM: 134.5
RHH5315_R3682 154.2
RHH5223_R3595 147.7
RHH5252_R3624 155.1
RHH5281_R3653 134.5

MONOCYTES - Schmiedel RNA-seqi

RNA-Seq data generated by Schmiedel et al is reported as average TPM.

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.

Max TPM 53.7
Schmiedel sample id TPM
Classical monocyte
TPM: 53.7
Samples: 91

Max TPM: 83.0
Min TPM: 26.9
MONOCYTES_1 83.0
MONOCYTES_2 83.0
MONOCYTES_3 78.3
MONOCYTES_4 77.1
MONOCYTES_5 76.7
MONOCYTES_6 76.3
MONOCYTES_7 74.8
MONOCYTES_8 74.6
MONOCYTES_9 74.6
MONOCYTES_10 70.4
MONOCYTES_11 70.4
MONOCYTES_12 70.2
MONOCYTES_13 70.0
MONOCYTES_14 70.0
MONOCYTES_15 69.5
MONOCYTES_16 69.3
MONOCYTES_17 68.3
MONOCYTES_18 68.2
MONOCYTES_19 68.0
MONOCYTES_20 67.7
MONOCYTES_21 65.4
MONOCYTES_22 63.8
MONOCYTES_23 63.6
MONOCYTES_24 62.3
MONOCYTES_25 62.2
MONOCYTES_26 61.6
MONOCYTES_27 61.5
MONOCYTES_28 61.3
MONOCYTES_29 61.3
MONOCYTES_30 61.2
MONOCYTES_31 61.1
MONOCYTES_32 60.6
MONOCYTES_33 60.4
MONOCYTES_34 60.4
MONOCYTES_35 59.7
MONOCYTES_36 58.8
MONOCYTES_37 58.2
MONOCYTES_38 56.8
MONOCYTES_39 56.8
MONOCYTES_40 54.7
MONOCYTES_41 54.4
MONOCYTES_42 54.2
MONOCYTES_43 54.1
MONOCYTES_44 53.2
MONOCYTES_45 53.2
MONOCYTES_46 52.9
MONOCYTES_47 52.5
MONOCYTES_48 51.3
MONOCYTES_49 51.1
MONOCYTES_50 50.6
MONOCYTES_51 50.1
MONOCYTES_52 49.4
MONOCYTES_53 49.4
MONOCYTES_54 49.2
MONOCYTES_55 49.2
MONOCYTES_56 49.0
MONOCYTES_57 48.8
MONOCYTES_58 47.6
MONOCYTES_59 47.5
MONOCYTES_60 46.6
MONOCYTES_61 46.5
MONOCYTES_62 46.5
MONOCYTES_63 46.2
MONOCYTES_64 46.0
MONOCYTES_65 45.9
MONOCYTES_66 45.9
MONOCYTES_67 45.9
MONOCYTES_68 45.1
MONOCYTES_69 44.0
MONOCYTES_70 43.3
MONOCYTES_71 43.1
MONOCYTES_72 42.8
MONOCYTES_73 42.4
MONOCYTES_74 42.1
MONOCYTES_75 41.1
MONOCYTES_76 40.9
MONOCYTES_77 40.6
MONOCYTES_78 39.6
MONOCYTES_79 38.0
MONOCYTES_80 36.0
MONOCYTES_81 33.7
MONOCYTES_82 33.0
MONOCYTES_83 32.8
MONOCYTES_84 31.7
MONOCYTES_85 30.7
MONOCYTES_86 30.2
MONOCYTES_87 30.2
MONOCYTES_88 29.2
MONOCYTES_89 28.6
MONOCYTES_90 27.7
MONOCYTES_91 26.9
Show allShow less
Non-classical monocyte
TPM: 31.1
Samples: 90

Max TPM: 55.7
Min TPM: 7.7
M2_1 55.7
M2_2 55.0
M2_3 54.2
M2_4 52.9
M2_5 48.5
M2_6 46.9
M2_7 46.5
M2_8 46.4
M2_9 46.2
M2_10 45.5
M2_11 45.1
M2_12 44.6
M2_13 44.5
M2_14 42.2
M2_15 42.0
M2_16 41.7
M2_17 41.4
M2_18 39.7
M2_19 39.7
M2_20 39.1
M2_21 39.1
M2_22 39.0
M2_23 38.9
M2_24 38.5
M2_25 38.5
M2_26 38.0
M2_27 37.3
M2_28 37.1
M2_29 37.0
M2_30 36.8
M2_31 36.7
M2_32 36.3
M2_33 35.9
M2_34 35.9
M2_35 35.7
M2_36 35.4
M2_37 35.4
M2_38 35.3
M2_39 34.1
M2_40 34.0
M2_41 33.6
M2_42 33.2
M2_43 32.8
M2_44 32.0
M2_45 32.0
M2_46 31.7
M2_47 31.7
M2_48 30.2
M2_49 30.1
M2_50 29.9
M2_51 29.7
M2_52 29.6
M2_53 28.5
M2_54 28.4
M2_55 28.2
M2_56 28.0
M2_57 27.9
M2_58 27.0
M2_59 26.8
M2_60 26.1
M2_61 26.0
M2_62 25.3
M2_63 24.9
M2_64 24.7
M2_65 24.6
M2_66 24.6
M2_67 24.6
M2_68 24.0
M2_69 23.8
M2_70 23.0
M2_71 21.4
M2_72 21.0
M2_73 20.6
M2_74 18.7
M2_75 17.9
M2_76 16.6
M2_77 16.2
M2_78 16.1
M2_79 15.7
M2_80 15.5
M2_81 15.2
M2_82 15.0
M2_83 14.6
M2_84 14.3
M2_85 14.2
M2_86 13.2
M2_87 11.8
M2_88 10.4
M2_89 9.9
M2_90 7.7
Show allShow less

Contact

  • NEWS ARTICLES
  • PRESS ROOM

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org