MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:178.9 nTPM
HPA Brain:237.5 nTPM
GTEx:178.9 nTPM
FANTOM5:112.2 Scaled Tags Per Million
Pig:275.7 nTPM
Mouse:1324.0 nTPM
Allen mouse:23.3 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 237.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 166.4
2019 Male, age 18, unknown 283.9
2411 Female, age 72, unknown 228.5
1827 Male, age 72, unknown 188.7
2219 Male, age 76, both hemispheres 179.1
1870 Female, age 42, unknown 145.0
1833 Male, age 53, unknown 143.7
2828 Female, age 72, unknown 138.5
1830 Male, age 51, unknown 132.9
2666 Male, age 74, left hemisphere 126.7
2586 Male, age 75, left hemisphere 97.4
Dorsal raphe nucleus
nTPM: 188.8
2298 Female, age 72, unknown 248.5
1828 Male, age 53, unknown 214.0
2047 Male, age 72, unknown 184.0
2750 Male, age 76, both hemispheres 169.2
2016 Female, age 72, unknown 128.4
Inferior colliculus
nTPM: 199.9
2097 Female, age 72, unknown 283.0
1890 Male, age 53, unknown 215.1
1848 Female, age 42, unknown 178.0
2849 Male, age 72, unknown 123.6
Median raphe nucleus
nTPM: 184.2
2220 Male, age 76, midline 184.2
Periaquaductal grey, anterior
nTPM: 157.2
2502 Female, age 75, unknown 168.3
1947 Male, age 18, unknown 157.6
1795 Male, age 51, unknown 145.6
Periaquaductal grey, dorsal
nTPM: 141.5
1831 Male, age 72, unknown 156.1
2464 Female, age 72, unknown 151.0
1840 Male, age 53, unknown 146.5
2850 Male, age 76, both hemispheres 112.5
Periaquaductal grey, lateral
nTPM: 143.7
2272 Male, age 74, both hemispheres 191.0
2053 Male, age 18, unknown 127.2
2140 Male, age 76, both hemispheres 113.0
Pretectal area
nTPM: 227.4
2007 Male, age 72, unknown 340.0
1817 Female, age 42, unknown 321.1
1944 Female, age 72, unknown 314.4
1816 Male, age 51, unknown 304.3
1815 Male, age 53, unknown 237.1
2667 Female, age 75, unknown 214.2
2273 Male, age 74, both hemispheres 210.4
2224 Female, age 72, unknown 180.1
2316 Male, age 76, right hemisphere 137.1
2825 Male, age 18, unknown 121.5
2407 Male, age 75, both hemispheres 121.2
Red nucleus
nTPM: 176.0
1821 Female, age 72, unknown 269.3
2785 Male, age 18, unknown 242.1
2725 Female, age 75, unknown 198.3
1954 Female, age 42, unknown 181.8
2823 Male, age 76, right hemisphere 173.4
1865 Male, age 51, unknown 169.4
1904 Male, age 53, unknown 155.7
2769 Male, age 72, unknown 153.9
2227 Male, age 72, unknown 152.0
2503 Female, age 72, unknown 150.2
2588 Male, age 74, left hemisphere 135.2
2584 Male, age 75, left hemisphere 131.2
Substantia nigra
nTPM: 237.5
1916 Female, age 42, unknown 355.5
1889 Female, age 72, unknown 301.5
2241 Male, age 72, unknown 274.9
1851 Male, age 51, unknown 270.6
1941 Male, age 53, unknown 268.1
2409 Female, age 72, unknown 250.2
2665 Male, age 74, both hemispheres 188.6
2590 Female, age 75, unknown 168.3
2699 Male, age 18, unknown 161.7
2583 Male, age 75, right hemisphere 135.9
Superior colliculus
nTPM: 167.4
2087 Female, age 72, unknown 264.6
1895 Male, age 76, right hemisphere 214.2
2668 Female, age 75, unknown 176.4
2261 Male, age 18, unknown 174.4
1796 Male, age 53, unknown 170.2
2587 Male, age 74, left hemisphere 165.8
1839 Male, age 51, unknown 144.9
1913 Female, age 42, unknown 132.6
1995 Male, age 72, unknown 124.9
2664 Male, age 75, both hemispheres 106.4
Ventral tegmental area
nTPM: 201.9
2410 Female, age 72, unknown 288.4
1915 Female, age 42, unknown 245.0
2218 Male, age 76, both hemispheres 242.9
1942 Male, age 51, unknown 166.3
2223 Female, age 72, unknown 143.2
2021 Male, age 53, unknown 125.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 178.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 178.9
Samples: 139

Max nTPM: 674.0
Min nTPM: 53.0
Std nTPM: 120.6
Median nTPM: 135.9
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 674.0
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 628.2
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 580.2
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 578.2
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 451.6
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 447.4
GTEX-1HFI6-0011-R2a-SM-CMKH5 40-49 years, male 421.9
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 411.6
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 395.0
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 391.3
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 377.1
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 112.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 112.2
FF:10158-103A5 76 years, female 112.2

MIDBRAIN - Pig RNA-seqi
Average nTPM 275.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 197.1
Samples: 4

Max nTPM: 305.0
Min nTPM: 101.1
Sample A Female 305.0
Sample B Female 152.6
Sample C Male 229.5
Sample D Male 101.1
Midbrain
nTPM: 197.6
Samples: 4

Max nTPM: 255.2
Min nTPM: 122.7
Sample A Female 122.7
Sample B Female 172.4
Sample C Male 255.2
Sample D Male 240.0
Periaqueductal gray
nTPM: 144.1
Samples: 3

Max nTPM: 163.3
Min nTPM: 120.4
Sample B Female 148.7
Sample C Male 163.3
Sample D Male 120.4
Superior colliculi
nTPM: 275.7
Samples: 4

Max nTPM: 357.6
Min nTPM: 205.4
Sample A Female 312.1
Sample B Female 205.4
Sample C Male 357.6
Sample D Male 227.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 1324.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 1324.0
Samples: 4

Max nTPM: 1366.3
Min nTPM: 1288.4
Sample A Male 1306.9
Sample B Male 1366.3
Sample C Female 1288.4
Sample D Female 1334.4

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 23.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 23.3
69752155 Antisense, RP_050505_01_C05, Mouse strain C57BL/6J (56 days, male) 23.3

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