HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Medium
Neuronal cells: Low
RNA expressioni
Consensus:43.5 nTPM
HPA Brain:32.3 nTPM
GTEx:43.5 nTPM
FANTOM5:67.9 Scaled Tags Per Million
Pig:10.8 nTPM
Mouse:29.1 nTPM
Allen mouse:0.7 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA055125
Glial cells Medium
Neuronal cells Low



HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 32.3
Sample id Sample description nTPM
Hippocampus
nTPM: 27.0
1898 Male, age 80, left hemisphere 34.2
2148 Female, age 91, left hemisphere 32.0
1855 Male, age 76, left hemisphere 30.8
1911 Female, age 85, right hemisphere 24.8
2621 Female, age 67, right hemisphere 23.9
2529 Female, age 94, left hemisphere 16.1
Dentate gyrus
nTPM: 29.4
1927 Female, age 91, both hemispheres 42.6
2010 Male, age 76, both hemispheres 35.3
2531 Female, age 67, both hemispheres 30.2
2246 Female, age 85, both hemispheres 25.2
2528 Male, age 74, both hemispheres 23.5
2530 Female, age 94, left hemisphere 19.6
Entorhinal gyrus
nTPM: 22.5
2764 Male, age 80, right hemisphere 25.2
2613 Female, age 94, left hemisphere 24.1
1938 Female, age 85, left hemisphere 23.6
1787 Male, age 76, left hemisphere 22.3
2117 Female, age 91, right hemisphere 20.8
2686 Male, age 75, right hemisphere 18.8
Hippocampus, CA1
nTPM: 32.3
2749 Male, age 80, left hemisphere 39.8
1873 Female, age 85, both hemispheres 36.5
2045 Male, age 76, both hemispheres 36.1
2527 Male, age 74, both hemispheres 25.1
2082 Female, age 91, right hemisphere 24.2
Hippocampus, CA2
nTPM: 27.3
1892 Male, age 76, both hemispheres 41.8
1963 Male, age 80, left hemisphere 34.8
2249 Male, age 74, both hemispheres 26.1
2113 Female, age 91, right hemisphere 22.6
1940 Female, age 85, left hemisphere 21.5
2437 Female, age 94, left hemisphere 16.9
Hippocampus, CA3
nTPM: 29.2
2436 Male, age 74, both hemispheres 34.7
2137 Male, age 80, left hemisphere 33.8
2620 Female, age 94, left hemisphere 29.2
1867 Male, age 76, both hemispheres 28.2
1891 Female, age 85, both hemispheres 25.7
2861 Female, age 67, both hemispheres 23.6
Parahippocampal cortex
nTPM: 22.3
1850 Male, age 80, both hemispheres 29.1
2693 Female, age 94, both hemispheres 26.8
2245 Female, age 91, both hemispheres 25.8
1990 Female, age 91, right hemisphere 25.0
1933 Female, age 85, both hemispheres 23.6
2018 Male, age 76, both hemispheres 21.7
2250 Female, age 67, right hemisphere 20.1
2532 Female, age 72, left hemisphere 18.8
2692 Male, age 74, both hemispheres 16.5
2622 Female, age 67, right hemisphere 15.8
Perirhinal gyrus
nTPM: 28.0
1847 Female, age 91, left hemisphere 34.6
1841 Female, age 85, right hemisphere 27.8
1794 Male, age 80, right hemisphere 27.0
2848 Male, age 76, right hemisphere 26.7
2521 Female, age 94, right hemisphere 23.7
Subiculum
nTPM: 21.2
1901 Male, age 80, both hemispheres 24.4
2729 Female, age 91, right hemisphere 24.4
1977 Female, age 85, both hemispheres 22.5
2042 Male, age 76, both hemispheres 20.2
2438 Female, age 94, left hemisphere 18.1
2619 Male, age 74, both hemispheres 17.8

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 43.5
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 43.5
Samples: 197

Max nTPM: 98.3
Min nTPM: 9.4
Std nTPM: 18.1
Median nTPM: 40.2
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 98.3
GTEX-1EX96-0011-R1a-SM-CE6R5 50-59 years, male 96.5
GTEX-N7MS-0011-R1a-SM-2HMJG 60-69 years, male 91.7
GTEX-139T8-0011-R1a-SM-5HL75 60-69 years, male 89.9
GTEX-14C5O-0011-R1b-SM-6AJBW 60-69 years, male 88.5
GTEX-14JIY-0011-R1a-SM-68713 60-69 years, male 84.9
GTEX-14BIM-0011-R1a-SM-69LQI 60-69 years, female 82.5
GTEX-X585-0011-R1B-SM-46MVE 50-59 years, male 81.3
GTEX-1AX9I-0011-R1b-SM-7RHG2 60-69 years, male 80.8
GTEX-1GTWX-0011-R1a-SM-CE6RL 60-69 years, male 80.8
GTEX-1EMGI-0011-R1b-SM-9OSWZ 60-69 years, male 79.3
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 67.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 67.9
FF:10169-103B7 60 years, female 97.6
FF:10153-102I9 76 years, female 38.2

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 10.8
Pig sample Sample description nTPM
Subiculum
nTPM: 9.8
Samples: 4

Max nTPM: 10.5
Min nTPM: 9.4
Sample A Female 9.7
Sample B Female 9.6
Sample C Male 10.5
Sample D Male 9.4
Dorsal hippocampus
nTPM: 9.3
Samples: 4

Max nTPM: 10.3
Min nTPM: 8.2
Sample A Female 10.3
Sample B Female 9.8
Sample C Male 8.9
Sample D Male 8.2
Entorhinal cortex
nTPM: 7.8
Samples: 4

Max nTPM: 8.5
Min nTPM: 7.1
Sample A Female 7.1
Sample B Female 8.5
Sample C Male 7.9
Sample D Male 7.6
Ventral hippocampus
nTPM: 10.9
Samples: 4

Max nTPM: 13.8
Min nTPM: 7.7
Sample A Female 13.8
Sample B Female 9.4
Sample C Male 12.5
Sample D Male 7.7

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 29.1
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 29.1
Samples: 4

Max nTPM: 33.9
Min nTPM: 26.4
Sample A Male 26.4
Sample B Male 33.9
Sample C Female 29.8
Sample D Female 26.4
Hippocampal formation
nTPM: 26.6
Samples: 4

Max nTPM: 30.5
Min nTPM: 20.9
Sample A Male 30.5
Sample B Male 30.4
Sample C Female 24.6
Sample D Female 20.9

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 0.7
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 0.7
68158074 Antisense, RP_041116_02_G03, Mouse strain C57BL/6J (56 days, male) 0.7

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