MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:31.6 nTPM
HPA Brain:22.5 nTPM
GTEx:31.6 nTPM
FANTOM5:30.7 Scaled Tags Per Million
Pig:10.6 nTPM
Mouse:36.9 nTPM
Allen mouse:0.3 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 22.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 16.4
2411 Female, age 72, unknown 19.3
1827 Male, age 72, unknown 18.8
1870 Female, age 42, unknown 18.2
2666 Male, age 74, left hemisphere 17.7
2219 Male, age 76, both hemispheres 17.2
2019 Male, age 18, unknown 15.7
2828 Female, age 72, unknown 15.7
1833 Male, age 53, unknown 15.4
1830 Male, age 51, unknown 14.7
2586 Male, age 75, left hemisphere 11.6
Dorsal raphe nucleus
nTPM: 22.5
2298 Female, age 72, unknown 27.6
2047 Male, age 72, unknown 24.4
1828 Male, age 53, unknown 22.9
2016 Female, age 72, unknown 19.5
2750 Male, age 76, both hemispheres 18.1
Inferior colliculus
nTPM: 17.5
2097 Female, age 72, unknown 19.4
1848 Female, age 42, unknown 18.1
1890 Male, age 53, unknown 16.8
2849 Male, age 72, unknown 15.8
Median raphe nucleus
nTPM: 21.6
2220 Male, age 76, midline 21.6
Periaquaductal grey, anterior
nTPM: 21.7
1947 Male, age 18, unknown 23.8
1795 Male, age 51, unknown 20.8
2502 Female, age 75, unknown 20.3
Periaquaductal grey, dorsal
nTPM: 20.3
2850 Male, age 76, both hemispheres 26.3
1840 Male, age 53, unknown 20.3
1831 Male, age 72, unknown 17.5
2464 Female, age 72, unknown 17.0
Periaquaductal grey, lateral
nTPM: 22.1
2140 Male, age 76, both hemispheres 24.9
2272 Male, age 74, both hemispheres 23.4
2053 Male, age 18, unknown 18.0
Pretectal area
nTPM: 19.3
2273 Male, age 74, both hemispheres 27.4
2224 Female, age 72, unknown 23.2
2667 Female, age 75, unknown 23.0
2825 Male, age 18, unknown 20.8
1816 Male, age 51, unknown 19.3
1817 Female, age 42, unknown 17.6
2007 Male, age 72, unknown 17.6
1944 Female, age 72, unknown 16.4
2316 Male, age 76, right hemisphere 16.4
1815 Male, age 53, unknown 15.4
2407 Male, age 75, both hemispheres 14.9
Red nucleus
nTPM: 14.8
2725 Female, age 75, unknown 19.0
1821 Female, age 72, unknown 18.8
2769 Male, age 72, unknown 15.4
1954 Female, age 42, unknown 14.8
2227 Male, age 72, unknown 14.8
2503 Female, age 72, unknown 14.8
2785 Male, age 18, unknown 14.5
2823 Male, age 76, right hemisphere 14.3
2584 Male, age 75, left hemisphere 12.8
2588 Male, age 74, left hemisphere 12.8
1865 Male, age 51, unknown 12.7
1904 Male, age 53, unknown 12.7
Substantia nigra
nTPM: 20.2
1916 Female, age 42, unknown 26.3
2241 Male, age 72, unknown 26.1
1941 Male, age 53, unknown 24.4
1851 Male, age 51, unknown 23.5
2409 Female, age 72, unknown 21.3
2699 Male, age 18, unknown 21.2
1889 Female, age 72, unknown 18.2
2590 Female, age 75, unknown 14.0
2583 Male, age 75, right hemisphere 13.4
2665 Male, age 74, both hemispheres 13.2
Superior colliculus
nTPM: 15.5
2587 Male, age 74, left hemisphere 20.7
1796 Male, age 53, unknown 18.6
1895 Male, age 76, right hemisphere 17.0
1839 Male, age 51, unknown 16.6
2261 Male, age 18, unknown 14.9
2087 Female, age 72, unknown 14.8
2668 Female, age 75, unknown 14.3
2664 Male, age 75, both hemispheres 14.2
1913 Female, age 42, unknown 12.4
1995 Male, age 72, unknown 11.5
Ventral tegmental area
nTPM: 20.6
1915 Female, age 42, unknown 23.5
2410 Female, age 72, unknown 21.3
1942 Male, age 51, unknown 20.4
2021 Male, age 53, unknown 20.2
2218 Male, age 76, both hemispheres 19.9
2223 Female, age 72, unknown 18.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 31.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 31.6
Samples: 139

Max nTPM: 77.4
Min nTPM: 14.7
Std nTPM: 9.9
Median nTPM: 30.3
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 77.4
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 56.3
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 56.1
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 53.9
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 53.8
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 53.2
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 49.2
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 49.0
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 48.6
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 48.0
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 47.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 30.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 30.7
FF:10158-103A5 76 years, female 30.7

MIDBRAIN - Pig RNA-seqi
Average nTPM 10.6
Pig sample Sample description nTPM
Substantia nigra
nTPM: 10.5
Samples: 4

Max nTPM: 13.1
Min nTPM: 6.5
Sample A Female 13.1
Sample B Female 10.1
Sample C Male 12.4
Sample D Male 6.5
Midbrain
nTPM: 8.8
Samples: 4

Max nTPM: 9.7
Min nTPM: 7.0
Sample A Female 7.0
Sample B Female 9.7
Sample C Male 9.4
Sample D Male 9.0
Periaqueductal gray
nTPM: 9.9
Samples: 3

Max nTPM: 10.8
Min nTPM: 9.1
Sample B Female 9.1
Sample C Male 10.8
Sample D Male 9.8
Superior colliculi
nTPM: 10.0
Samples: 4

Max nTPM: 11.5
Min nTPM: 7.5
Sample A Female 9.8
Sample B Female 11.5
Sample C Male 11.3
Sample D Male 7.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 36.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 37.0
Samples: 4

Max nTPM: 39.1
Min nTPM: 32.6
Sample A Male 39.1
Sample B Male 38.1
Sample C Female 32.6
Sample D Female 38.0

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.3
68158074 Antisense, RP_041116_02_G03, Mouse strain C57BL/6J (56 days, male) 0.3

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