MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:19.3 nTPM
HPA Brain:22.0 nTPM
GTEx:19.3 nTPM
FANTOM5:14.1 Scaled Tags Per Million
Pig:30.4 nTPM
Mouse:6.6 nTPM
Allen mouse:2.4 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 22.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 18.9
2586 Male, age 75, left hemisphere 23.2
2219 Male, age 76, both hemispheres 21.2
1827 Male, age 72, unknown 20.2
2411 Female, age 72, unknown 20.0
2019 Male, age 18, unknown 19.5
2828 Female, age 72, unknown 19.1
1870 Female, age 42, unknown 17.7
1833 Male, age 53, unknown 17.1
2666 Male, age 74, left hemisphere 16.1
1830 Male, age 51, unknown 15.5
Dorsal raphe nucleus
nTPM: 20.6
2298 Female, age 72, unknown 24.1
2047 Male, age 72, unknown 23.2
2750 Male, age 76, both hemispheres 19.6
1828 Male, age 53, unknown 19.4
2016 Female, age 72, unknown 16.6
Inferior colliculus
nTPM: 19.9
2097 Female, age 72, unknown 24.2
1890 Male, age 53, unknown 20.1
1848 Female, age 42, unknown 18.3
2849 Male, age 72, unknown 17.1
Median raphe nucleus
nTPM: 22.0
2220 Male, age 76, midline 22.0
Periaquaductal grey, anterior
nTPM: 21.9
2502 Female, age 75, unknown 23.0
1947 Male, age 18, unknown 21.9
1795 Male, age 51, unknown 21.0
Periaquaductal grey, dorsal
nTPM: 17.8
1840 Male, age 53, unknown 21.4
2464 Female, age 72, unknown 19.2
1831 Male, age 72, unknown 16.5
2850 Male, age 76, both hemispheres 14.2
Periaquaductal grey, lateral
nTPM: 17.7
2272 Male, age 74, both hemispheres 18.9
2053 Male, age 18, unknown 17.8
2140 Male, age 76, both hemispheres 16.4
Pretectal area
nTPM: 20.2
1816 Male, age 51, unknown 23.6
2007 Male, age 72, unknown 23.1
1944 Female, age 72, unknown 21.9
2224 Female, age 72, unknown 21.4
1817 Female, age 42, unknown 20.6
2667 Female, age 75, unknown 19.4
2825 Male, age 18, unknown 19.0
2273 Male, age 74, both hemispheres 18.8
2407 Male, age 75, both hemispheres 18.8
1815 Male, age 53, unknown 18.3
2316 Male, age 76, right hemisphere 17.5
Red nucleus
nTPM: 17.3
1821 Female, age 72, unknown 19.5
1954 Female, age 42, unknown 18.5
2503 Female, age 72, unknown 18.0
2785 Male, age 18, unknown 18.0
2227 Male, age 72, unknown 17.2
1865 Male, age 51, unknown 17.0
2584 Male, age 75, left hemisphere 17.0
1904 Male, age 53, unknown 16.7
2588 Male, age 74, left hemisphere 16.6
2725 Female, age 75, unknown 16.6
2769 Male, age 72, unknown 16.6
2823 Male, age 76, right hemisphere 15.6
Substantia nigra
nTPM: 20.3
1916 Female, age 42, unknown 26.5
1851 Male, age 51, unknown 24.2
1941 Male, age 53, unknown 22.2
1889 Female, age 72, unknown 21.9
2241 Male, age 72, unknown 21.8
2583 Male, age 75, right hemisphere 20.4
2590 Female, age 75, unknown 18.5
2665 Male, age 74, both hemispheres 17.3
2699 Male, age 18, unknown 17.0
2409 Female, age 72, unknown 13.5
Superior colliculus
nTPM: 19.1
2664 Male, age 75, both hemispheres 24.9
2261 Male, age 18, unknown 21.8
2668 Female, age 75, unknown 21.1
2087 Female, age 72, unknown 20.4
1796 Male, age 53, unknown 20.1
1895 Male, age 76, right hemisphere 18.4
1839 Male, age 51, unknown 16.8
2587 Male, age 74, left hemisphere 16.7
1995 Male, age 72, unknown 15.9
1913 Female, age 42, unknown 15.0
Ventral tegmental area
nTPM: 21.0
1915 Female, age 42, unknown 23.9
2218 Male, age 76, both hemispheres 21.4
2410 Female, age 72, unknown 21.2
1942 Male, age 51, unknown 21.1
2223 Female, age 72, unknown 19.2
2021 Male, age 53, unknown 18.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 19.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 19.3
Samples: 139

Max nTPM: 34.0
Min nTPM: 10.5
Std nTPM: 4.1
Median nTPM: 19.3
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 34.0
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 29.6
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 28.4
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 27.9
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 27.5
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 27.4
GTEX-13OW8-0011-R2a-SM-5L3G2 60-69 years, male 26.9
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 26.2
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 26.2
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 25.7
GTEX-15DYW-0011-R2b-SM-7KUKY 60-69 years, female 25.6
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 14.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 14.1
FF:10158-103A5 76 years, female 14.1

MIDBRAIN - Pig RNA-seqi
Average nTPM 30.4
Pig sample Sample description nTPM
Substantia nigra
nTPM: 25.2
Samples: 4

Max nTPM: 34.9
Min nTPM: 15.7
Sample A Female 34.9
Sample B Female 23.3
Sample C Male 27.0
Sample D Male 15.7
Midbrain
nTPM: 30.2
Samples: 4

Max nTPM: 39.4
Min nTPM: 24.7
Sample A Female 26.4
Sample B Female 24.7
Sample C Male 39.4
Sample D Male 30.3
Periaqueductal gray
nTPM: 20.4
Samples: 3

Max nTPM: 23.4
Min nTPM: 16.3
Sample B Female 21.4
Sample C Male 23.4
Sample D Male 16.3
Superior colliculi
nTPM: 30.4
Samples: 4

Max nTPM: 36.7
Min nTPM: 24.9
Sample A Female 35.0
Sample B Female 25.1
Sample C Male 36.7
Sample D Male 24.9

MIDBRAIN - Mouse RNA-seqi
Average nTPM 6.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 6.6
Samples: 4

Max nTPM: 7.8
Min nTPM: 5.3
Sample A Male 7.8
Sample B Male 5.3
Sample C Female 7.0
Sample D Female 6.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 2.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.4
68637635 Antisense, RP_050126_01_C09, Mouse strain C57BL/6J (56 days, male) 2.4

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