MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:24.3 nTPM
HPA Brain:98.7 nTPM
GTEx:24.3 nTPM
FANTOM5:98.7 Scaled Tags Per Million
Pig:27.4 nTPM
Mouse:24.2 nTPM
Allen mouse:3.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 98.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 98.7
2586 Male, age 75, left hemisphere 118.2
2828 Female, age 72, unknown 104.3
2666 Male, age 74, left hemisphere 104.0
1827 Male, age 72, unknown 103.8
2411 Female, age 72, unknown 101.2
2019 Male, age 18, unknown 95.8
1833 Male, age 53, unknown 92.6
1870 Female, age 42, unknown 92.5
1830 Male, age 51, unknown 89.0
2219 Male, age 76, both hemispheres 85.7
Dorsal raphe nucleus
nTPM: 90.5
2047 Male, age 72, unknown 98.8
2750 Male, age 76, both hemispheres 94.8
2298 Female, age 72, unknown 93.4
1828 Male, age 53, unknown 87.4
2016 Female, age 72, unknown 77.9
Inferior colliculus
nTPM: 81.8
1848 Female, age 42, unknown 87.4
2849 Male, age 72, unknown 84.3
2097 Female, age 72, unknown 79.5
1890 Male, age 53, unknown 76.0
Median raphe nucleus
nTPM: 94.5
2220 Male, age 76, midline 94.5
Periaquaductal grey, anterior
nTPM: 98.3
1947 Male, age 18, unknown 103.8
2502 Female, age 75, unknown 97.1
1795 Male, age 51, unknown 94.1
Periaquaductal grey, dorsal
nTPM: 80.3
2464 Female, age 72, unknown 85.8
1840 Male, age 53, unknown 79.9
1831 Male, age 72, unknown 79.7
2850 Male, age 76, both hemispheres 75.6
Periaquaductal grey, lateral
nTPM: 75.1
2053 Male, age 18, unknown 82.5
2272 Male, age 74, both hemispheres 77.0
2140 Male, age 76, both hemispheres 65.9
Pretectal area
nTPM: 95.0
2007 Male, age 72, unknown 114.5
1816 Male, age 51, unknown 108.6
2667 Female, age 75, unknown 103.8
2407 Male, age 75, both hemispheres 103.3
1817 Female, age 42, unknown 99.2
1944 Female, age 72, unknown 97.7
1815 Male, age 53, unknown 95.7
2316 Male, age 76, right hemisphere 86.9
2825 Male, age 18, unknown 83.9
2224 Female, age 72, unknown 79.8
2273 Male, age 74, both hemispheres 71.1
Red nucleus
nTPM: 91.6
2584 Male, age 75, left hemisphere 124.2
2588 Male, age 74, left hemisphere 104.6
2725 Female, age 75, unknown 102.6
2785 Male, age 18, unknown 95.9
2227 Male, age 72, unknown 89.4
2769 Male, age 72, unknown 85.6
1904 Male, age 53, unknown 84.9
1954 Female, age 42, unknown 84.3
1821 Female, age 72, unknown 82.3
1865 Male, age 51, unknown 82.2
2503 Female, age 72, unknown 82.0
2823 Male, age 76, right hemisphere 81.2
Substantia nigra
nTPM: 89.6
1941 Male, age 53, unknown 106.1
2583 Male, age 75, right hemisphere 101.8
1916 Female, age 42, unknown 101.5
1889 Female, age 72, unknown 96.5
1851 Male, age 51, unknown 95.3
2665 Male, age 74, both hemispheres 90.7
2699 Male, age 18, unknown 82.6
2590 Female, age 75, unknown 75.1
2241 Male, age 72, unknown 74.4
2409 Female, age 72, unknown 71.7
Superior colliculus
nTPM: 91.7
2664 Male, age 75, both hemispheres 108.4
1796 Male, age 53, unknown 98.6
1839 Male, age 51, unknown 93.8
1913 Female, age 42, unknown 92.3
2261 Male, age 18, unknown 91.9
2087 Female, age 72, unknown 91.1
2668 Female, age 75, unknown 87.6
2587 Male, age 74, left hemisphere 87.4
1895 Male, age 76, right hemisphere 84.1
1995 Male, age 72, unknown 81.3
Ventral tegmental area
nTPM: 88.5
2410 Female, age 72, unknown 97.2
2218 Male, age 76, both hemispheres 91.3
1942 Male, age 51, unknown 88.6
1915 Female, age 42, unknown 86.6
2021 Male, age 53, unknown 85.1
2223 Female, age 72, unknown 82.2

MIDBRAIN - GTEx RNA-seqi
Average nTPM 24.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 24.3
Samples: 139

Max nTPM: 67.9
Min nTPM: 9.5
Std nTPM: 7.1
Median nTPM: 23.9
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 67.9
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 46.0
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 39.8
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 36.8
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 36.1
GTEX-X585-0011-R2B-SM-46MVF 50-59 years, male 35.8
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 35.2
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 34.3
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 34.3
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 33.7
GTEX-13N2G-0011-R2a-SM-5MR4Q 60-69 years, male 33.6
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 98.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 98.7
FF:10158-103A5 76 years, female 98.7

MIDBRAIN - Pig RNA-seqi
Average nTPM 27.4
Pig sample Sample description nTPM
Substantia nigra
nTPM: 26.1
Samples: 4

Max nTPM: 30.7
Min nTPM: 20.8
Sample A Female 28.7
Sample B Female 20.8
Sample C Male 30.7
Sample D Male 24.0
Midbrain
nTPM: 27.4
Samples: 4

Max nTPM: 33.2
Min nTPM: 21.5
Sample A Female 29.6
Sample B Female 21.5
Sample C Male 33.2
Sample D Male 25.4
Periaqueductal gray
nTPM: 22.3
Samples: 3

Max nTPM: 25.1
Min nTPM: 20.3
Sample B Female 21.4
Sample C Male 25.1
Sample D Male 20.3
Superior colliculi
nTPM: 26.3
Samples: 4

Max nTPM: 29.0
Min nTPM: 24.5
Sample A Female 26.1
Sample B Female 24.5
Sample C Male 29.0
Sample D Male 25.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 24.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 24.2
Samples: 4

Max nTPM: 27.8
Min nTPM: 22.3
Sample A Male 23.2
Sample B Male 22.3
Sample C Female 27.8
Sample D Female 23.4

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 3.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 3.1
71280688 Antisense, RP_050818_01_D05, Mouse strain C57BL/6J (56 days, male) 3.1

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org