HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Low
Neuronal cells: Medium
RNA expressioni
Consensus:16.0 nTPM
HPA Brain:60.6 nTPM
GTEx:16.0 nTPM
FANTOM5:78.1 Scaled Tags Per Million
Pig:36.8 nTPM
Mouse:28.3 nTPM
Allen mouse:0.8 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA023652Antibody CAB011455
Glial cells LowNot detected
Neuronal cells MediumMedium





HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 60.6
Sample id Sample description nTPM
Hippocampus
nTPM: 57.4
1911 Female, age 85, right hemisphere 65.5
1855 Male, age 76, left hemisphere 59.5
1898 Male, age 80, left hemisphere 57.5
2529 Female, age 94, left hemisphere 56.3
2148 Female, age 91, left hemisphere 55.9
2621 Female, age 67, right hemisphere 49.9
Dentate gyrus
nTPM: 53.7
2010 Male, age 76, both hemispheres 64.7
2528 Male, age 74, both hemispheres 60.8
1927 Female, age 91, both hemispheres 54.6
2246 Female, age 85, both hemispheres 52.3
2531 Female, age 67, both hemispheres 45.1
2530 Female, age 94, left hemisphere 44.9
Entorhinal gyrus
nTPM: 50.2
2117 Female, age 91, right hemisphere 63.8
1787 Male, age 76, left hemisphere 57.3
2686 Male, age 75, right hemisphere 51.9
1938 Female, age 85, left hemisphere 43.9
2613 Female, age 94, left hemisphere 42.7
2764 Male, age 80, right hemisphere 41.8
Hippocampus, CA1
nTPM: 60.6
2082 Female, age 91, right hemisphere 73.2
1873 Female, age 85, both hemispheres 65.6
2045 Male, age 76, both hemispheres 58.0
2749 Male, age 80, left hemisphere 54.8
2527 Male, age 74, both hemispheres 51.7
Hippocampus, CA2
nTPM: 60.2
2249 Male, age 74, both hemispheres 79.3
2113 Female, age 91, right hemisphere 76.2
1940 Female, age 85, left hemisphere 65.4
1963 Male, age 80, left hemisphere 50.6
1892 Male, age 76, both hemispheres 45.1
2437 Female, age 94, left hemisphere 44.5
Hippocampus, CA3
nTPM: 48.6
1891 Female, age 85, both hemispheres 56.5
2436 Male, age 74, both hemispheres 49.5
1867 Male, age 76, both hemispheres 49.3
2620 Female, age 94, left hemisphere 48.7
2861 Female, age 67, both hemispheres 44.7
2137 Male, age 80, left hemisphere 42.8
Parahippocampal cortex
nTPM: 48.3
2018 Male, age 76, both hemispheres 56.5
1850 Male, age 80, both hemispheres 54.2
2693 Female, age 94, both hemispheres 53.5
2250 Female, age 67, right hemisphere 52.5
1990 Female, age 91, right hemisphere 47.5
2692 Male, age 74, both hemispheres 46.9
2622 Female, age 67, right hemisphere 45.2
1933 Female, age 85, both hemispheres 43.3
2245 Female, age 91, both hemispheres 42.7
2532 Female, age 72, left hemisphere 40.2
Perirhinal gyrus
nTPM: 52.9
1794 Male, age 80, right hemisphere 57.2
1841 Female, age 85, right hemisphere 56.3
2521 Female, age 94, right hemisphere 54.7
2848 Male, age 76, right hemisphere 50.0
1847 Female, age 91, left hemisphere 46.1
Subiculum
nTPM: 53.2
2729 Female, age 91, right hemisphere 70.0
2619 Male, age 74, both hemispheres 57.7
2042 Male, age 76, both hemispheres 52.9
1901 Male, age 80, both hemispheres 48.5
1977 Female, age 85, both hemispheres 47.1
2438 Female, age 94, left hemisphere 42.9

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 16.0
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 16.0
Samples: 197

Max nTPM: 36.7
Min nTPM: 7.6
Std nTPM: 4.4
Median nTPM: 15.3
GTEX-X4EP-0011-R1A-SM-3P624 60-69 years, female 36.7
GTEX-QVUS-0011-R1A-SM-3GAD2 60-69 years, female 36.5
GTEX-NPJ8-0011-R1a-SM-33HCB 40-49 years, male 33.5
GTEX-1F6IF-0011-R1b-SM-9WG78 60-69 years, male 28.4
GTEX-ZAB4-0011-R1a-SM-4RGNO 40-49 years, male 27.9
GTEX-QDT8-0011-R1A-SM-32PKS 30-39 years, female 27.2
GTEX-13RTJ-0011-R1a-SM-5O9D9 60-69 years, male 25.2
GTEX-UTHO-0011-R1A-SM-3GIJO 60-69 years, male 25.0
GTEX-14C5O-0011-R1b-SM-6AJBW 60-69 years, male 24.6
GTEX-16XZZ-0011-R1a-SM-7LTAH 60-69 years, male 23.2
GTEX-17EVQ-0011-R1a-SM-7189S 70-79 years, male 23.2
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 78.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 78.1
FF:10153-102I9 76 years, female 80.4
FF:10169-103B7 60 years, female 75.8

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 36.8
Pig sample Sample description nTPM
Subiculum
nTPM: 29.3
Samples: 4

Max nTPM: 34.6
Min nTPM: 26.8
Sample A Female 34.6
Sample B Female 26.8
Sample C Male 26.9
Sample D Male 29.0
Dorsal hippocampus
nTPM: 36.8
Samples: 4

Max nTPM: 43.8
Min nTPM: 32.3
Sample A Female 43.8
Sample B Female 36.5
Sample C Male 34.6
Sample D Male 32.3
Entorhinal cortex
nTPM: 33.0
Samples: 4

Max nTPM: 36.0
Min nTPM: 29.4
Sample A Female 36.0
Sample B Female 34.9
Sample C Male 31.8
Sample D Male 29.4
Ventral hippocampus
nTPM: 32.5
Samples: 4

Max nTPM: 43.1
Min nTPM: 24.8
Sample A Female 35.2
Sample B Female 26.8
Sample C Male 24.8
Sample D Male 43.1

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 28.3
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 18.6
Samples: 4

Max nTPM: 19.2
Min nTPM: 17.1
Sample A Male 19.2
Sample B Male 19.2
Sample C Female 18.9
Sample D Female 17.1
Hippocampal formation
nTPM: 28.3
Samples: 4

Max nTPM: 31.8
Min nTPM: 24.6
Sample A Male 25.9
Sample B Male 30.9
Sample C Female 31.8
Sample D Female 24.6

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 0.8
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 0.8
70565183 Antisense, RP_050623_04_D09, Mouse strain C57BL/6J (56 days, male) 1.7
70918850 Antisense, RP_050712_04_F05, Mouse strain C57BL/6J (56 days, male) 0.4
73931414 Antisense, RP_051214_04_E06, Mouse strain C57BL/6J (56 days, male) 0.2

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