MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:18.6 nTPM
HPA Brain:84.6 nTPM
GTEx:18.6 nTPM
FANTOM5:52.2 Scaled Tags Per Million
Pig:33.3 nTPM
Mouse:15.5 nTPM
Allen mouse:0.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 84.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 54.4
2019 Male, age 18, unknown 60.9
2586 Male, age 75, left hemisphere 60.4
1870 Female, age 42, unknown 60.2
2828 Female, age 72, unknown 56.2
1830 Male, age 51, unknown 54.7
2411 Female, age 72, unknown 54.2
1827 Male, age 72, unknown 54.1
2666 Male, age 74, left hemisphere 53.2
1833 Male, age 53, unknown 50.8
2219 Male, age 76, both hemispheres 39.1
Dorsal raphe nucleus
nTPM: 71.0
2016 Female, age 72, unknown 85.0
2298 Female, age 72, unknown 79.6
2047 Male, age 72, unknown 70.0
1828 Male, age 53, unknown 67.1
2750 Male, age 76, both hemispheres 53.1
Inferior colliculus
nTPM: 61.2
2097 Female, age 72, unknown 64.3
1848 Female, age 42, unknown 61.7
2849 Male, age 72, unknown 60.9
1890 Male, age 53, unknown 58.0
Median raphe nucleus
nTPM: 66.4
2220 Male, age 76, midline 66.4
Periaquaductal grey, anterior
nTPM: 63.0
2502 Female, age 75, unknown 64.8
1795 Male, age 51, unknown 64.4
1947 Male, age 18, unknown 60.0
Periaquaductal grey, dorsal
nTPM: 84.6
2850 Male, age 76, both hemispheres 101.6
1840 Male, age 53, unknown 86.7
1831 Male, age 72, unknown 82.4
2464 Female, age 72, unknown 67.5
Periaquaductal grey, lateral
nTPM: 79.0
2140 Male, age 76, both hemispheres 105.9
2272 Male, age 74, both hemispheres 67.3
2053 Male, age 18, unknown 63.8
Pretectal area
nTPM: 61.1
2667 Female, age 75, unknown 78.9
2224 Female, age 72, unknown 74.2
2273 Male, age 74, both hemispheres 73.2
1817 Female, age 42, unknown 60.6
2316 Male, age 76, right hemisphere 58.9
1815 Male, age 53, unknown 58.6
1944 Female, age 72, unknown 58.6
2825 Male, age 18, unknown 58.1
1816 Male, age 51, unknown 51.4
2407 Male, age 75, both hemispheres 50.4
2007 Male, age 72, unknown 49.3
Red nucleus
nTPM: 54.1
2725 Female, age 75, unknown 60.4
1821 Female, age 72, unknown 60.1
1954 Female, age 42, unknown 59.6
1865 Male, age 51, unknown 56.2
2785 Male, age 18, unknown 56.0
2503 Female, age 72, unknown 55.6
2588 Male, age 74, left hemisphere 52.1
2769 Male, age 72, unknown 52.1
2227 Male, age 72, unknown 51.1
2823 Male, age 76, right hemisphere 49.9
1904 Male, age 53, unknown 48.5
2584 Male, age 75, left hemisphere 48.1
Substantia nigra
nTPM: 60.6
2699 Male, age 18, unknown 74.9
1916 Female, age 42, unknown 68.7
2241 Male, age 72, unknown 66.0
1851 Male, age 51, unknown 61.6
1941 Male, age 53, unknown 61.6
1889 Female, age 72, unknown 58.4
2583 Male, age 75, right hemisphere 56.1
2590 Female, age 75, unknown 53.9
2665 Male, age 74, both hemispheres 53.7
2409 Female, age 72, unknown 50.8
Superior colliculus
nTPM: 57.1
2664 Male, age 75, both hemispheres 70.4
1995 Male, age 72, unknown 70.2
1913 Female, age 42, unknown 61.8
1796 Male, age 53, unknown 60.5
2087 Female, age 72, unknown 58.0
1839 Male, age 51, unknown 55.2
2587 Male, age 74, left hemisphere 53.5
2261 Male, age 18, unknown 51.2
1895 Male, age 76, right hemisphere 48.8
2668 Female, age 75, unknown 41.9
Ventral tegmental area
nTPM: 65.5
2021 Male, age 53, unknown 76.8
1942 Male, age 51, unknown 70.9
1915 Female, age 42, unknown 68.7
2218 Male, age 76, both hemispheres 62.3
2223 Female, age 72, unknown 59.9
2410 Female, age 72, unknown 54.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 18.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 18.6
Samples: 139

Max nTPM: 44.4
Min nTPM: 9.1
Std nTPM: 6.5
Median nTPM: 16.8
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 44.4
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 41.0
GTEX-13QJC-0011-R2b-SM-5PNUN 60-69 years, female 37.5
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 37.1
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 36.4
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 35.5
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 33.3
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 32.1
GTEX-14PJO-0011-R2a-SM-5ZZVF 60-69 years, male 32.0
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 30.2
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 30.1
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 52.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 52.2
FF:10158-103A5 76 years, female 52.2

MIDBRAIN - Pig RNA-seqi
Average nTPM 33.3
Pig sample Sample description nTPM
Substantia nigra
nTPM: 31.0
Samples: 4

Max nTPM: 35.3
Min nTPM: 24.7
Sample A Female 35.3
Sample B Female 33.1
Sample C Male 30.9
Sample D Male 24.7
Midbrain
nTPM: 33.3
Samples: 4

Max nTPM: 41.8
Min nTPM: 26.4
Sample A Female 41.8
Sample B Female 29.1
Sample C Male 35.9
Sample D Male 26.4
Periaqueductal gray
nTPM: 26.8
Samples: 3

Max nTPM: 30.2
Min nTPM: 24.7
Sample B Female 25.4
Sample C Male 30.2
Sample D Male 24.7
Superior colliculi
nTPM: 31.0
Samples: 4

Max nTPM: 36.7
Min nTPM: 28.5
Sample A Female 29.5
Sample B Female 29.4
Sample C Male 36.7
Sample D Male 28.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 15.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 15.5
Samples: 4

Max nTPM: 15.9
Min nTPM: 14.7
Sample A Male 14.7
Sample B Male 15.7
Sample C Female 15.8
Sample D Female 15.9

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.1
70565183 Antisense, RP_050623_04_D09, Mouse strain C57BL/6J (56 days, male) 0.2
70918850 Antisense, RP_050712_04_F05, Mouse strain C57BL/6J (56 days, male) 0.0
73931414 Antisense, RP_051214_04_E06, Mouse strain C57BL/6J (56 days, male) 0.0

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