MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:39.1 nTPM
HPA Brain:40.2 nTPM
GTEx:39.1 nTPM
FANTOM5:41.0 Scaled Tags Per Million
Pig:92.8 nTPM
Mouse:224.1 nTPM
Allen mouse:9.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 40.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 28.2
1827 Male, age 72, unknown 37.6
2411 Female, age 72, unknown 36.1
2019 Male, age 18, unknown 33.9
2666 Male, age 74, left hemisphere 30.4
1870 Female, age 42, unknown 28.3
2219 Male, age 76, both hemispheres 25.2
2828 Female, age 72, unknown 24.9
1833 Male, age 53, unknown 22.2
1830 Male, age 51, unknown 21.5
2586 Male, age 75, left hemisphere 21.5
Dorsal raphe nucleus
nTPM: 34.3
2298 Female, age 72, unknown 51.9
1828 Male, age 53, unknown 34.6
2047 Male, age 72, unknown 31.5
2750 Male, age 76, both hemispheres 29.4
2016 Female, age 72, unknown 23.9
Inferior colliculus
nTPM: 30.2
2097 Female, age 72, unknown 44.1
1890 Male, age 53, unknown 28.2
1848 Female, age 42, unknown 27.7
2849 Male, age 72, unknown 20.8
Median raphe nucleus
nTPM: 33.9
2220 Male, age 76, midline 33.9
Periaquaductal grey, anterior
nTPM: 31.6
1947 Male, age 18, unknown 33.9
1795 Male, age 51, unknown 30.4
2502 Female, age 75, unknown 30.4
Periaquaductal grey, dorsal
nTPM: 25.5
1840 Male, age 53, unknown 27.9
1831 Male, age 72, unknown 26.1
2464 Female, age 72, unknown 26.0
2850 Male, age 76, both hemispheres 21.9
Periaquaductal grey, lateral
nTPM: 25.2
2272 Male, age 74, both hemispheres 29.7
2053 Male, age 18, unknown 25.2
2140 Male, age 76, both hemispheres 20.7
Pretectal area
nTPM: 35.2
1816 Male, age 51, unknown 49.8
2007 Male, age 72, unknown 47.9
1944 Female, age 72, unknown 46.3
1817 Female, age 42, unknown 40.2
2224 Female, age 72, unknown 39.0
1815 Male, age 53, unknown 35.9
2273 Male, age 74, both hemispheres 32.4
2667 Female, age 75, unknown 29.4
2825 Male, age 18, unknown 24.5
2316 Male, age 76, right hemisphere 24.0
2407 Male, age 75, both hemispheres 17.8
Red nucleus
nTPM: 25.4
1821 Female, age 72, unknown 40.3
2725 Female, age 75, unknown 33.2
1954 Female, age 42, unknown 28.1
2785 Male, age 18, unknown 27.5
1904 Male, age 53, unknown 23.2
2584 Male, age 75, left hemisphere 23.2
2823 Male, age 76, right hemisphere 23.0
2769 Male, age 72, unknown 22.2
1865 Male, age 51, unknown 21.9
2227 Male, age 72, unknown 21.9
2503 Female, age 72, unknown 20.1
2588 Male, age 74, left hemisphere 20.1
Substantia nigra
nTPM: 40.2
1916 Female, age 42, unknown 53.5
2241 Male, age 72, unknown 49.5
1941 Male, age 53, unknown 46.2
1851 Male, age 51, unknown 45.0
1889 Female, age 72, unknown 43.4
2409 Female, age 72, unknown 43.0
2665 Male, age 74, both hemispheres 35.6
2590 Female, age 75, unknown 32.3
2699 Male, age 18, unknown 27.7
2583 Male, age 75, right hemisphere 25.3
Superior colliculus
nTPM: 27.5
2087 Female, age 72, unknown 37.6
2261 Male, age 18, unknown 35.1
1796 Male, age 53, unknown 34.6
1895 Male, age 76, right hemisphere 32.2
2668 Female, age 75, unknown 28.9
1839 Male, age 51, unknown 25.3
2587 Male, age 74, left hemisphere 22.5
1913 Female, age 42, unknown 21.7
1995 Male, age 72, unknown 19.5
2664 Male, age 75, both hemispheres 17.9
Ventral tegmental area
nTPM: 33.6
1915 Female, age 42, unknown 39.3
2223 Female, age 72, unknown 35.7
2218 Male, age 76, both hemispheres 35.5
2410 Female, age 72, unknown 35.5
1942 Male, age 51, unknown 30.9
2021 Male, age 53, unknown 24.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 39.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 39.1
Samples: 139

Max nTPM: 155.9
Min nTPM: 11.8
Std nTPM: 20.7
Median nTPM: 32.8
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 155.9
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 118.9
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 103.1
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 87.5
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 78.0
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 77.8
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 75.3
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 75.2
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 71.5
GTEX-15CHQ-0011-R2b-SM-6AJAD 60-69 years, male 71.3
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 70.3
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 41.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 41.0
FF:10158-103A5 76 years, female 41.0

MIDBRAIN - Pig RNA-seqi
Average nTPM 92.8
Pig sample Sample description nTPM
Substantia nigra
nTPM: 92.8
Samples: 4

Max nTPM: 114.7
Min nTPM: 66.9
Sample A Female 102.8
Sample B Female 66.9
Sample C Male 114.7
Sample D Male 86.9
Midbrain
nTPM: 92.6
Samples: 4

Max nTPM: 106.9
Min nTPM: 85.2
Sample A Female 90.2
Sample B Female 88.2
Sample C Male 106.9
Sample D Male 85.2
Periaqueductal gray
nTPM: 71.3
Samples: 3

Max nTPM: 79.4
Min nTPM: 61.0
Sample B Female 73.4
Sample C Male 79.4
Sample D Male 61.0
Superior colliculi
nTPM: 91.5
Samples: 4

Max nTPM: 123.7
Min nTPM: 71.6
Sample A Female 85.1
Sample B Female 71.6
Sample C Male 123.7
Sample D Male 85.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 224.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 224.1
Samples: 4

Max nTPM: 230.4
Min nTPM: 217.7
Sample A Male 217.7
Sample B Male 230.4
Sample C Female 221.7
Sample D Female 226.5

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 9.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 9.0
70525808 Antisense, RP_050317_04_E10, Mouse strain C57BL/6J (56 days, male) 9.0

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