HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Not detected
Neuronal cells: Low
Mouse brain, Intensity
Hippocampal formationi 		65.506
RNA expressioni
Consensus:26.0 nTPM
HPA Brain:52.4 nTPM
GTEx:26.0 nTPM
FANTOM5:45.3 Scaled Tags Per Million
Pig:30.1 nTPM
Mouse:26.2 nTPM
Allen mouse:3.5 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA042282Antibody HPA063796Antibody CAB000443
Glial cells Not detectedMediumNot detected
Neuronal cells Not detectedMediumLow







HIPPOCAMPAL FORMATION - Mouse brain profilei , antibody HPA042282
Hippocampal formation mean intensity 65.506
intensityi
FRONT BACK
Polymorph layer of the dentate gyrus 36.899
Molecular layer of the dentate gyrus 34.221
Granular dentate gyrus 59.732
CA1 - oriens layer 23.361
CA1 - pyramidal layer 44.506
CA1 - radiatum layer 22.802
CA2 - oriens layer 26.172
CA2 - pyramidal layer 56.411
CA2 - radiatum layer 31.638
CA3 - oriens layer 27.521
CA3 - pyramidal layer 65.506
CA3 - radiatum layer 27.736
Stratum lucidum 29.627
Lacunosum moleculare 19.634
Subiculum 28.682

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 52.4
Sample id Sample description nTPM
Hippocampus
nTPM: 47.3
2621 Female, age 67, right hemisphere 57.4
1911 Female, age 85, right hemisphere 50.2
1855 Male, age 76, left hemisphere 47.1
1898 Male, age 80, left hemisphere 44.8
2529 Female, age 94, left hemisphere 42.2
2148 Female, age 91, left hemisphere 41.9
Dentate gyrus
nTPM: 48.2
2246 Female, age 85, both hemispheres 51.2
2010 Male, age 76, both hemispheres 51.1
2531 Female, age 67, both hemispheres 50.9
2530 Female, age 94, left hemisphere 49.5
2528 Male, age 74, both hemispheres 44.4
1927 Female, age 91, both hemispheres 42.1
Entorhinal gyrus
nTPM: 50.8
2764 Male, age 80, right hemisphere 57.5
2613 Female, age 94, left hemisphere 54.9
2117 Female, age 91, right hemisphere 50.1
2686 Male, age 75, right hemisphere 49.1
1787 Male, age 76, left hemisphere 48.4
1938 Female, age 85, left hemisphere 45.0
Hippocampus, CA1
nTPM: 42.7
1873 Female, age 85, both hemispheres 46.0
2082 Female, age 91, right hemisphere 44.0
2527 Male, age 74, both hemispheres 42.9
2045 Male, age 76, both hemispheres 42.7
2749 Male, age 80, left hemisphere 37.9
Hippocampus, CA2
nTPM: 41.8
2437 Female, age 94, left hemisphere 46.0
2249 Male, age 74, both hemispheres 44.4
1940 Female, age 85, left hemisphere 42.9
2113 Female, age 91, right hemisphere 40.9
1963 Male, age 80, left hemisphere 40.4
1892 Male, age 76, both hemispheres 36.5
Hippocampus, CA3
nTPM: 46.4
2861 Female, age 67, both hemispheres 62.0
2620 Female, age 94, left hemisphere 54.6
2436 Male, age 74, both hemispheres 49.7
1891 Female, age 85, both hemispheres 47.3
1867 Male, age 76, both hemispheres 37.2
2137 Male, age 80, left hemisphere 27.5
Parahippocampal cortex
nTPM: 49.3
2692 Male, age 74, both hemispheres 58.5
2622 Female, age 67, right hemisphere 57.5
2532 Female, age 72, left hemisphere 55.2
2693 Female, age 94, both hemispheres 50.3
2018 Male, age 76, both hemispheres 50.1
1933 Female, age 85, both hemispheres 46.9
2245 Female, age 91, both hemispheres 46.4
1850 Male, age 80, both hemispheres 45.5
1990 Female, age 91, right hemisphere 44.3
2250 Female, age 67, right hemisphere 38.1
Perirhinal gyrus
nTPM: 44.1
1794 Male, age 80, right hemisphere 50.3
2848 Male, age 76, right hemisphere 45.2
1847 Female, age 91, left hemisphere 41.8
2521 Female, age 94, right hemisphere 41.7
1841 Female, age 85, right hemisphere 41.4
Subiculum
nTPM: 52.4
2042 Male, age 76, both hemispheres 72.7
2619 Male, age 74, both hemispheres 57.0
1977 Female, age 85, both hemispheres 48.0
1901 Male, age 80, both hemispheres 47.9
2438 Female, age 94, left hemisphere 46.7
2729 Female, age 91, right hemisphere 42.0

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 26.0
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 26.0
Samples: 197

Max nTPM: 52.8
Min nTPM: 9.6
Std nTPM: 8.8
Median nTPM: 24.6
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 52.8
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 52.4
GTEX-13PDP-0011-R1a-SM-5PNX5 60-69 years, male 52.2
GTEX-13QJC-0011-R1b-SM-5S2UU 60-69 years, female 51.0
GTEX-13N1W-0011-R1b-SM-5MR4T 70-79 years, male 50.3
GTEX-13JVG-0011-R1a-SM-5KM32 60-69 years, male 50.0
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 47.5
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 47.2
GTEX-XMD1-0011-R1A-SM-4AT4C 60-69 years, male 47.2
GTEX-17MF6-0011-R1a-SM-72D6O 40-49 years, male 45.3
GTEX-13RTL-0011-R1a-SM-5PNZ8 40-49 years, male 44.9
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 45.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 45.3
FF:10153-102I9 76 years, female 60.6
FF:10169-103B7 60 years, female 30.1

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 30.1
Pig sample Sample description nTPM
Subiculum
nTPM: 22.9
Samples: 4

Max nTPM: 28.4
Min nTPM: 18.8
Sample A Female 28.4
Sample B Female 18.8
Sample C Male 23.9
Sample D Male 20.3
Dorsal hippocampus
nTPM: 27.6
Samples: 4

Max nTPM: 37.8
Min nTPM: 20.4
Sample A Female 37.8
Sample B Female 31.6
Sample C Male 20.7
Sample D Male 20.4
Entorhinal cortex
nTPM: 23.6
Samples: 4

Max nTPM: 27.2
Min nTPM: 20.3
Sample A Female 27.2
Sample B Female 20.3
Sample C Male 25.1
Sample D Male 21.8
Ventral hippocampus
nTPM: 30.1
Samples: 4

Max nTPM: 36.7
Min nTPM: 18.7
Sample A Female 29.5
Sample B Female 18.7
Sample C Male 36.7
Sample D Male 35.5

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 26.2
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 19.1
Samples: 4

Max nTPM: 21.5
Min nTPM: 18.2
Sample A Male 21.5
Sample B Male 18.5
Sample C Female 18.2
Sample D Female 18.2
Hippocampal formation
nTPM: 26.2
Samples: 4

Max nTPM: 30.5
Min nTPM: 20.1
Sample A Male 20.1
Sample B Male 26.8
Sample C Female 30.5
Sample D Female 27.2

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 3.5
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 3.5
71656769 Antisense, RP_050927_04_C08, Mouse strain C57BL/6J (56 days, male) 3.5

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