MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:19.6 nTPM
HPA Brain:52.0 nTPM
GTEx:19.6 nTPM
FANTOM5:74.3 Scaled Tags Per Million
Pig:23.8 nTPM
Mouse:15.7 nTPM
Allen mouse:1.9 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 52.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 51.0
2586 Male, age 75, left hemisphere 66.0
1833 Male, age 53, unknown 58.8
1830 Male, age 51, unknown 53.2
2828 Female, age 72, unknown 51.7
2666 Male, age 74, left hemisphere 51.4
2411 Female, age 72, unknown 51.2
1827 Male, age 72, unknown 46.8
2219 Male, age 76, both hemispheres 45.5
1870 Female, age 42, unknown 43.7
2019 Male, age 18, unknown 41.7
Dorsal raphe nucleus
nTPM: 41.2
2750 Male, age 76, both hemispheres 46.0
1828 Male, age 53, unknown 42.7
2298 Female, age 72, unknown 40.1
2016 Female, age 72, unknown 39.4
2047 Male, age 72, unknown 37.9
Inferior colliculus
nTPM: 40.0
2849 Male, age 72, unknown 54.3
1848 Female, age 42, unknown 39.1
1890 Male, age 53, unknown 35.0
2097 Female, age 72, unknown 31.6
Median raphe nucleus
nTPM: 33.7
2220 Male, age 76, midline 33.7
Periaquaductal grey, anterior
nTPM: 41.1
1947 Male, age 18, unknown 43.3
1795 Male, age 51, unknown 43.1
2502 Female, age 75, unknown 36.9
Periaquaductal grey, dorsal
nTPM: 39.5
2464 Female, age 72, unknown 43.7
1831 Male, age 72, unknown 42.2
2850 Male, age 76, both hemispheres 40.5
1840 Male, age 53, unknown 31.6
Periaquaductal grey, lateral
nTPM: 36.7
2053 Male, age 18, unknown 40.8
2272 Male, age 74, both hemispheres 36.0
2140 Male, age 76, both hemispheres 33.2
Pretectal area
nTPM: 43.4
2407 Male, age 75, both hemispheres 55.4
1815 Male, age 53, unknown 51.4
1817 Female, age 42, unknown 48.1
2825 Male, age 18, unknown 47.3
2316 Male, age 76, right hemisphere 45.0
2667 Female, age 75, unknown 42.6
2224 Female, age 72, unknown 40.4
2007 Male, age 72, unknown 39.9
1816 Male, age 51, unknown 39.4
1944 Female, age 72, unknown 39.4
2273 Male, age 74, both hemispheres 28.5
Red nucleus
nTPM: 52.0
2823 Male, age 76, right hemisphere 69.1
2584 Male, age 75, left hemisphere 60.1
1904 Male, age 53, unknown 58.1
2588 Male, age 74, left hemisphere 55.5
1865 Male, age 51, unknown 53.4
2769 Male, age 72, unknown 52.7
2785 Male, age 18, unknown 50.6
2227 Male, age 72, unknown 49.6
1821 Female, age 72, unknown 49.1
2725 Female, age 75, unknown 45.2
2503 Female, age 72, unknown 41.3
1954 Female, age 42, unknown 39.4
Substantia nigra
nTPM: 40.9
2583 Male, age 75, right hemisphere 53.7
2699 Male, age 18, unknown 49.2
2665 Male, age 74, both hemispheres 45.0
1889 Female, age 72, unknown 42.4
1851 Male, age 51, unknown 41.1
1916 Female, age 42, unknown 40.4
2590 Female, age 75, unknown 40.2
1941 Male, age 53, unknown 36.6
2241 Male, age 72, unknown 32.1
2409 Female, age 72, unknown 28.4
Superior colliculus
nTPM: 48.1
2668 Female, age 75, unknown 60.5
1913 Female, age 42, unknown 52.9
2664 Male, age 75, both hemispheres 52.6
1995 Male, age 72, unknown 50.9
1895 Male, age 76, right hemisphere 50.4
2587 Male, age 74, left hemisphere 47.7
1839 Male, age 51, unknown 47.1
1796 Male, age 53, unknown 43.5
2087 Female, age 72, unknown 38.1
2261 Male, age 18, unknown 36.9
Ventral tegmental area
nTPM: 40.6
2223 Female, age 72, unknown 45.4
2021 Male, age 53, unknown 41.0
2410 Female, age 72, unknown 40.5
2218 Male, age 76, both hemispheres 40.4
1915 Female, age 42, unknown 38.2
1942 Male, age 51, unknown 37.9

MIDBRAIN - GTEx RNA-seqi
Average nTPM 19.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 19.6
Samples: 139

Max nTPM: 45.4
Min nTPM: 7.7
Std nTPM: 6.3
Median nTPM: 18.6
GTEX-T5JC-0011-R2A-SM-32PLZ 20-29 years, male 45.4
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 39.3
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 38.8
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 38.7
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 35.4
GTEX-WHSE-0011-R2A-SM-3P5ZL 20-29 years, male 34.6
GTEX-131XH-0011-R2b-SM-5DUVY 50-59 years, male 32.0
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 31.4
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 29.3
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 28.7
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 28.1
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 74.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 74.3
FF:10158-103A5 76 years, female 74.3

MIDBRAIN - Pig RNA-seqi
Average nTPM 23.8
Pig sample Sample description nTPM
Substantia nigra
nTPM: 20.0
Samples: 4

Max nTPM: 23.9
Min nTPM: 16.5
Sample A Female 23.9
Sample B Female 16.5
Sample C Male 22.6
Sample D Male 17.0
Midbrain
nTPM: 23.5
Samples: 4

Max nTPM: 28.9
Min nTPM: 15.4
Sample A Female 27.5
Sample B Female 15.4
Sample C Male 28.9
Sample D Male 22.3
Periaqueductal gray
nTPM: 17.5
Samples: 3

Max nTPM: 20.9
Min nTPM: 15.1
Sample B Female 15.1
Sample C Male 20.9
Sample D Male 16.5
Superior colliculi
nTPM: 23.8
Samples: 4

Max nTPM: 25.5
Min nTPM: 22.6
Sample A Female 23.5
Sample B Female 22.6
Sample C Male 25.5
Sample D Male 23.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 15.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 15.7
Samples: 4

Max nTPM: 17.4
Min nTPM: 14.2
Sample A Male 17.4
Sample B Male 14.2
Sample C Female 15.3
Sample D Female 15.8

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.9
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.9
71656769 Antisense, RP_050927_04_C08, Mouse strain C57BL/6J (56 days, male) 1.9

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