HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Low
Neuronal cells: Medium
RNA expressioni
Consensus:15.2 nTPM
HPA Brain:14.6 nTPM
GTEx:15.2 nTPM
FANTOM5:35.6 Scaled Tags Per Million
Pig:5.1 nTPM
Mouse:2.5 nTPM
Allen mouse:0.3 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA016928
Glial cells Low
Neuronal cells Medium



HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 14.6
Sample id Sample description nTPM
Hippocampus
nTPM: 13.4
2529 Female, age 94, left hemisphere 17.3
1898 Male, age 80, left hemisphere 15.3
2148 Female, age 91, left hemisphere 13.8
1855 Male, age 76, left hemisphere 12.7
1911 Female, age 85, right hemisphere 11.2
2621 Female, age 67, right hemisphere 10.1
Dentate gyrus
nTPM: 14.6
2530 Female, age 94, left hemisphere 16.7
2010 Male, age 76, both hemispheres 15.5
2528 Male, age 74, both hemispheres 15.5
1927 Female, age 91, both hemispheres 13.9
2531 Female, age 67, both hemispheres 13.8
2246 Female, age 85, both hemispheres 12.1
Entorhinal gyrus
nTPM: 13.0
2117 Female, age 91, right hemisphere 16.4
1938 Female, age 85, left hemisphere 16.2
2764 Male, age 80, right hemisphere 14.0
2686 Male, age 75, right hemisphere 11.8
1787 Male, age 76, left hemisphere 11.7
2613 Female, age 94, left hemisphere 8.1
Hippocampus, CA1
nTPM: 12.7
2045 Male, age 76, both hemispheres 16.1
1873 Female, age 85, both hemispheres 15.0
2527 Male, age 74, both hemispheres 11.8
2082 Female, age 91, right hemisphere 10.8
2749 Male, age 80, left hemisphere 9.7
Hippocampus, CA2
nTPM: 12.8
1963 Male, age 80, left hemisphere 14.7
2249 Male, age 74, both hemispheres 14.2
2437 Female, age 94, left hemisphere 12.9
1940 Female, age 85, left hemisphere 12.5
2113 Female, age 91, right hemisphere 12.1
1892 Male, age 76, both hemispheres 10.6
Hippocampus, CA3
nTPM: 12.2
2436 Male, age 74, both hemispheres 16.6
2861 Female, age 67, both hemispheres 13.5
2620 Female, age 94, left hemisphere 12.0
1867 Male, age 76, both hemispheres 11.1
1891 Female, age 85, both hemispheres 11.0
2137 Male, age 80, left hemisphere 9.0
Parahippocampal cortex
nTPM: 10.9
2018 Male, age 76, both hemispheres 13.0
1990 Female, age 91, right hemisphere 12.6
1850 Male, age 80, both hemispheres 12.1
2250 Female, age 67, right hemisphere 11.9
2245 Female, age 91, both hemispheres 11.6
1933 Female, age 85, both hemispheres 10.4
2532 Female, age 72, left hemisphere 10.0
2692 Male, age 74, both hemispheres 10.0
2622 Female, age 67, right hemisphere 9.6
2693 Female, age 94, both hemispheres 7.9
Perirhinal gyrus
nTPM: 11.4
1847 Female, age 91, left hemisphere 14.4
1841 Female, age 85, right hemisphere 11.1
2848 Male, age 76, right hemisphere 11.1
1794 Male, age 80, right hemisphere 10.5
2521 Female, age 94, right hemisphere 10.0
Subiculum
nTPM: 12.6
2729 Female, age 91, right hemisphere 15.6
2619 Male, age 74, both hemispheres 14.6
1977 Female, age 85, both hemispheres 14.3
2438 Female, age 94, left hemisphere 10.6
2042 Male, age 76, both hemispheres 10.4
1901 Male, age 80, both hemispheres 10.1

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 15.2
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 15.2
Samples: 197

Max nTPM: 47.2
Min nTPM: 5.0
Std nTPM: 5.6
Median nTPM: 14.1
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 47.2
GTEX-OHPN-0011-R1A-SM-2I5GB 60-69 years, female 31.5
GTEX-1399T-0011-R1b-SM-5DUWN 60-69 years, male 29.9
GTEX-1CAV2-0011-R1a-SM-ARZML 40-49 years, female 28.8
GTEX-1CB4J-0011-R1a-SM-9WG64 60-69 years, male 28.8
GTEX-1A3MX-0011-R1b-SM-7P8PH 60-69 years, male 28.6
GTEX-1B996-0011-R1b-SM-7P8PO 60-69 years, male 27.8
GTEX-16NPV-0011-R1b-SM-7MGVZ 50-59 years, female 27.4
GTEX-1J1OQ-0011-R1a-SM-A9G1Z 40-49 years, female 27.4
GTEX-13NYS-0011-R1b-SM-5MR55 60-69 years, male 25.9
GTEX-NL3H-0011-R1a-SM-48TDJ 60-69 years, male 25.6
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 35.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 35.6
FF:10169-103B7 60 years, female 39.4
FF:10153-102I9 76 years, female 31.9

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 5.1
Pig sample Sample description nTPM
Subiculum
nTPM: 5.2
Samples: 4

Max nTPM: 5.6
Min nTPM: 4.0
Sample A Female 4.0
Sample B Female 5.6
Sample C Male 5.5
Sample D Male 5.5
Dorsal hippocampus
nTPM: 4.2
Samples: 4

Max nTPM: 5.1
Min nTPM: 3.5
Sample A Female 3.5
Sample B Female 4.1
Sample C Male 3.9
Sample D Male 5.1
Entorhinal cortex
nTPM: 5.0
Samples: 4

Max nTPM: 5.8
Min nTPM: 3.7
Sample A Female 5.5
Sample B Female 4.9
Sample C Male 3.7
Sample D Male 5.8
Ventral hippocampus
nTPM: 5.0
Samples: 4

Max nTPM: 6.0
Min nTPM: 3.8
Sample A Female 6.0
Sample B Female 5.8
Sample C Male 4.2
Sample D Male 3.8

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 2.5
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 2.2
Samples: 4

Max nTPM: 2.5
Min nTPM: 1.8
Sample A Male 1.8
Sample B Male 2.5
Sample C Female 2.0
Sample D Female 2.3
Hippocampal formation
nTPM: 2.5
Samples: 4

Max nTPM: 3.2
Min nTPM: 1.6
Sample A Male 3.2
Sample B Male 2.5
Sample C Female 1.6
Sample D Female 2.6

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 0.3
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 0.3
386227 Antisense, RP_040804_01_B11, Mouse strain C57BL/6J (56 days, male) 0.3

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