MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:21.9 nTPM
HPA Brain:28.3 nTPM
GTEx:21.9 nTPM
FANTOM5:26.9 Scaled Tags Per Million
Pig:8.0 nTPM
Mouse:6.4 nTPM
Allen mouse:0.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 28.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 20.8
2666 Male, age 74, left hemisphere 41.3
1827 Male, age 72, unknown 28.9
2828 Female, age 72, unknown 24.1
2019 Male, age 18, unknown 23.1
2586 Male, age 75, left hemisphere 21.1
2411 Female, age 72, unknown 18.3
2219 Male, age 76, both hemispheres 14.3
1870 Female, age 42, unknown 13.0
1833 Male, age 53, unknown 12.3
1830 Male, age 51, unknown 11.7
Dorsal raphe nucleus
nTPM: 17.4
2298 Female, age 72, unknown 23.1
1828 Male, age 53, unknown 21.4
2016 Female, age 72, unknown 15.1
2047 Male, age 72, unknown 14.3
2750 Male, age 76, both hemispheres 13.0
Inferior colliculus
nTPM: 14.8
2097 Female, age 72, unknown 21.7
1890 Male, age 53, unknown 16.0
1848 Female, age 42, unknown 12.2
2849 Male, age 72, unknown 9.4
Median raphe nucleus
nTPM: 15.0
2220 Male, age 76, midline 15.0
Periaquaductal grey, anterior
nTPM: 21.9
1795 Male, age 51, unknown 31.0
2502 Female, age 75, unknown 17.8
1947 Male, age 18, unknown 16.8
Periaquaductal grey, dorsal
nTPM: 16.5
1831 Male, age 72, unknown 23.7
2850 Male, age 76, both hemispheres 15.5
2464 Female, age 72, unknown 14.2
1840 Male, age 53, unknown 12.6
Periaquaductal grey, lateral
nTPM: 17.8
2272 Male, age 74, both hemispheres 18.5
2140 Male, age 76, both hemispheres 17.6
2053 Male, age 18, unknown 17.5
Pretectal area
nTPM: 28.3
1816 Male, age 51, unknown 55.7
1944 Female, age 72, unknown 52.9
2007 Male, age 72, unknown 44.1
1817 Female, age 42, unknown 35.0
1815 Male, age 53, unknown 34.0
2224 Female, age 72, unknown 18.2
2273 Male, age 74, both hemispheres 17.2
2667 Female, age 75, unknown 16.5
2825 Male, age 18, unknown 13.6
2407 Male, age 75, both hemispheres 11.9
2316 Male, age 76, right hemisphere 11.8
Red nucleus
nTPM: 14.6
2785 Male, age 18, unknown 25.8
2503 Female, age 72, unknown 18.3
2588 Male, age 74, left hemisphere 17.1
2725 Female, age 75, unknown 14.4
2584 Male, age 75, left hemisphere 14.2
1821 Female, age 72, unknown 13.7
1954 Female, age 42, unknown 12.7
1904 Male, age 53, unknown 12.6
2769 Male, age 72, unknown 11.6
2227 Male, age 72, unknown 11.5
1865 Male, age 51, unknown 11.4
2823 Male, age 76, right hemisphere 11.4
Substantia nigra
nTPM: 17.5
1889 Female, age 72, unknown 29.0
2409 Female, age 72, unknown 21.0
1916 Female, age 42, unknown 20.1
1851 Male, age 51, unknown 18.8
2665 Male, age 74, both hemispheres 18.1
2583 Male, age 75, right hemisphere 17.3
1941 Male, age 53, unknown 14.1
2590 Female, age 75, unknown 13.6
2699 Male, age 18, unknown 11.3
2241 Male, age 72, unknown 11.2
Superior colliculus
nTPM: 24.8
2668 Female, age 75, unknown 46.5
2087 Female, age 72, unknown 36.9
2261 Male, age 18, unknown 34.1
1796 Male, age 53, unknown 29.5
1913 Female, age 42, unknown 25.1
1995 Male, age 72, unknown 21.2
2664 Male, age 75, both hemispheres 16.0
2587 Male, age 74, left hemisphere 15.0
1895 Male, age 76, right hemisphere 12.7
1839 Male, age 51, unknown 11.1
Ventral tegmental area
nTPM: 16.4
2410 Female, age 72, unknown 18.4
1942 Male, age 51, unknown 17.0
1915 Female, age 42, unknown 16.5
2021 Male, age 53, unknown 16.2
2218 Male, age 76, both hemispheres 16.0
2223 Female, age 72, unknown 14.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 21.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 21.9
Samples: 139

Max nTPM: 68.0
Min nTPM: 6.2
Std nTPM: 8.2
Median nTPM: 21.0
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 68.0
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 45.6
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 40.7
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 37.9
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 37.0
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 36.4
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 35.7
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 35.4
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 35.1
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 35.1
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 33.4
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 26.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 26.9
FF:10158-103A5 76 years, female 26.9

MIDBRAIN - Pig RNA-seqi
Average nTPM 8.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 6.4
Samples: 4

Max nTPM: 8.1
Min nTPM: 5.4
Sample A Female 8.1
Sample B Female 5.8
Sample C Male 5.4
Sample D Male 6.4
Midbrain
nTPM: 5.5
Samples: 4

Max nTPM: 6.2
Min nTPM: 4.4
Sample A Female 6.2
Sample B Female 5.7
Sample C Male 5.7
Sample D Male 4.4
Periaqueductal gray
nTPM: 5.4
Samples: 3

Max nTPM: 5.8
Min nTPM: 4.9
Sample B Female 5.5
Sample C Male 4.9
Sample D Male 5.8
Superior colliculi
nTPM: 8.0
Samples: 4

Max nTPM: 11.6
Min nTPM: 6.4
Sample A Female 7.3
Sample B Female 6.8
Sample C Male 11.6
Sample D Male 6.4

MIDBRAIN - Mouse RNA-seqi
Average nTPM 6.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 6.4
Samples: 4

Max nTPM: 7.0
Min nTPM: 5.2
Sample A Male 7.0
Sample B Male 6.7
Sample C Female 5.2
Sample D Female 6.5

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.0
386227 Antisense, RP_040804_01_B11, Mouse strain C57BL/6J (56 days, male) 0.0

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