MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:15.9 nTPM
HPA Brain:18.5 nTPM
GTEx:15.9 nTPM
FANTOM5:16.0 Scaled Tags Per Million
Pig:16.5 nTPM
Mouse:41.4 nTPM
Allen mouse:8.8 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 18.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 17.4
2586 Male, age 75, left hemisphere 20.5
1827 Male, age 72, unknown 18.6
2219 Male, age 76, both hemispheres 18.1
2666 Male, age 74, left hemisphere 17.6
2828 Female, age 72, unknown 17.6
2411 Female, age 72, unknown 17.1
2019 Male, age 18, unknown 16.7
1833 Male, age 53, unknown 16.4
1830 Male, age 51, unknown 15.8
1870 Female, age 42, unknown 15.6
Dorsal raphe nucleus
nTPM: 16.7
2298 Female, age 72, unknown 17.5
2047 Male, age 72, unknown 17.4
2750 Male, age 76, both hemispheres 16.9
1828 Male, age 53, unknown 16.2
2016 Female, age 72, unknown 15.7
Inferior colliculus
nTPM: 16.4
2097 Female, age 72, unknown 17.7
2849 Male, age 72, unknown 16.3
1848 Female, age 42, unknown 16.2
1890 Male, age 53, unknown 15.4
Median raphe nucleus
nTPM: 17.9
2220 Male, age 76, midline 17.9
Periaquaductal grey, anterior
nTPM: 18.5
2502 Female, age 75, unknown 19.7
1795 Male, age 51, unknown 18.5
1947 Male, age 18, unknown 17.3
Periaquaductal grey, dorsal
nTPM: 15.5
1840 Male, age 53, unknown 16.4
2464 Female, age 72, unknown 16.1
1831 Male, age 72, unknown 15.0
2850 Male, age 76, both hemispheres 14.4
Periaquaductal grey, lateral
nTPM: 15.5
2272 Male, age 74, both hemispheres 16.7
2053 Male, age 18, unknown 15.5
2140 Male, age 76, both hemispheres 14.5
Pretectal area
nTPM: 17.0
1816 Male, age 51, unknown 21.0
1944 Female, age 72, unknown 19.4
2007 Male, age 72, unknown 19.2
1817 Female, age 42, unknown 17.9
1815 Male, age 53, unknown 17.3
2825 Male, age 18, unknown 16.6
2273 Male, age 74, both hemispheres 16.2
2224 Female, age 72, unknown 15.8
2407 Male, age 75, both hemispheres 15.2
2667 Female, age 75, unknown 15.0
2316 Male, age 76, right hemisphere 13.6
Red nucleus
nTPM: 16.0
2584 Male, age 75, left hemisphere 18.6
2725 Female, age 75, unknown 18.4
2588 Male, age 74, left hemisphere 16.2
1821 Female, age 72, unknown 16.1
2785 Male, age 18, unknown 15.8
2503 Female, age 72, unknown 15.7
2823 Male, age 76, right hemisphere 15.6
2227 Male, age 72, unknown 15.3
1954 Female, age 42, unknown 15.2
1865 Male, age 51, unknown 15.0
1904 Male, age 53, unknown 15.0
2769 Male, age 72, unknown 14.6
Substantia nigra
nTPM: 18.3
1916 Female, age 42, unknown 24.8
1941 Male, age 53, unknown 20.0
1851 Male, age 51, unknown 19.8
2665 Male, age 74, both hemispheres 18.5
2241 Male, age 72, unknown 18.3
2583 Male, age 75, right hemisphere 17.3
1889 Female, age 72, unknown 17.0
2699 Male, age 18, unknown 17.0
2590 Female, age 75, unknown 15.9
2409 Female, age 72, unknown 14.4
Superior colliculus
nTPM: 16.9
2261 Male, age 18, unknown 20.4
2087 Female, age 72, unknown 19.3
1796 Male, age 53, unknown 18.1
2664 Male, age 75, both hemispheres 17.9
2668 Female, age 75, unknown 17.4
1895 Male, age 76, right hemisphere 15.9
1995 Male, age 72, unknown 15.3
1839 Male, age 51, unknown 14.8
2587 Male, age 74, left hemisphere 14.8
1913 Female, age 42, unknown 14.6
Ventral tegmental area
nTPM: 17.4
1915 Female, age 42, unknown 18.8
2218 Male, age 76, both hemispheres 18.7
2410 Female, age 72, unknown 18.2
1942 Male, age 51, unknown 16.7
2021 Male, age 53, unknown 16.5
2223 Female, age 72, unknown 15.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 15.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 15.9
Samples: 139

Max nTPM: 26.5
Min nTPM: 7.7
Std nTPM: 4.1
Median nTPM: 15.5
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 26.5
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 25.8
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 25.1
GTEX-14BIN-0011-R2a-SM-5S2RJ 50-59 years, female 24.9
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 24.5
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 24.1
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 24.0
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 23.7
GTEX-12WSF-0011-R2a-SM-5DUVU 70-79 years, male 23.3
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 22.9
GTEX-15DYW-0011-R2b-SM-7KUKY 60-69 years, female 22.3
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 16.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 16.0
FF:10158-103A5 76 years, female 16.0

MIDBRAIN - Pig RNA-seqi
Average nTPM 16.5
Pig sample Sample description nTPM
Substantia nigra
nTPM: 16.2
Samples: 4

Max nTPM: 19.8
Min nTPM: 12.9
Sample A Female 19.8
Sample B Female 13.5
Sample C Male 18.4
Sample D Male 12.9
Midbrain
nTPM: 16.5
Samples: 4

Max nTPM: 20.4
Min nTPM: 14.0
Sample A Female 20.4
Sample B Female 16.1
Sample C Male 15.3
Sample D Male 14.0
Periaqueductal gray
nTPM: 12.9
Samples: 3

Max nTPM: 14.7
Min nTPM: 11.9
Sample B Female 12.1
Sample C Male 14.7
Sample D Male 11.9
Superior colliculi
nTPM: 16.2
Samples: 4

Max nTPM: 18.0
Min nTPM: 13.5
Sample A Female 18.0
Sample B Female 13.5
Sample C Male 16.6
Sample D Male 16.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 41.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 41.4
Samples: 4

Max nTPM: 44.4
Min nTPM: 37.7
Sample A Male 44.4
Sample B Male 41.3
Sample C Female 37.7
Sample D Female 42.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 8.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 8.8
512988 Antisense, RP_040809_02_F06, Mouse strain C57BL/6J (56 days, male) 16.1
81599642 Antisense, RP_071212_04_F03, Mouse strain C57BL/6J (56 days, male) 1.5

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