MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:8.3 nTPM
HPA Brain:26.3 nTPM
GTEx:8.3 nTPM
FANTOM5:65.4 Scaled Tags Per Million
Pig:9.9 nTPM
Mouse:50.1 nTPM
Allen mouse:0.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 26.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 24.9
2019 Male, age 18, unknown 34.2
2219 Male, age 76, both hemispheres 33.6
1870 Female, age 42, unknown 25.7
1833 Male, age 53, unknown 25.2
1830 Male, age 51, unknown 24.0
2666 Male, age 74, left hemisphere 22.7
2411 Female, age 72, unknown 22.4
2586 Male, age 75, left hemisphere 22.2
1827 Male, age 72, unknown 21.2
2828 Female, age 72, unknown 18.0
Dorsal raphe nucleus
nTPM: 15.9
2750 Male, age 76, both hemispheres 17.9
2016 Female, age 72, unknown 16.8
1828 Male, age 53, unknown 15.7
2298 Female, age 72, unknown 15.6
2047 Male, age 72, unknown 13.3
Inferior colliculus
nTPM: 24.8
2849 Male, age 72, unknown 35.0
1848 Female, age 42, unknown 24.8
2097 Female, age 72, unknown 21.2
1890 Male, age 53, unknown 18.3
Median raphe nucleus
nTPM: 14.0
2220 Male, age 76, midline 14.0
Periaquaductal grey, anterior
nTPM: 18.8
2502 Female, age 75, unknown 23.1
1795 Male, age 51, unknown 17.6
1947 Male, age 18, unknown 15.6
Periaquaductal grey, dorsal
nTPM: 21.6
2464 Female, age 72, unknown 27.3
1840 Male, age 53, unknown 23.7
1831 Male, age 72, unknown 18.1
2850 Male, age 76, both hemispheres 17.5
Periaquaductal grey, lateral
nTPM: 20.0
2053 Male, age 18, unknown 22.2
2140 Male, age 76, both hemispheres 19.8
2272 Male, age 74, both hemispheres 18.1
Pretectal area
nTPM: 26.3
1944 Female, age 72, unknown 41.1
2316 Male, age 76, right hemisphere 28.3
1816 Male, age 51, unknown 27.6
2007 Male, age 72, unknown 27.5
2407 Male, age 75, both hemispheres 26.8
1817 Female, age 42, unknown 25.9
2667 Female, age 75, unknown 25.5
1815 Male, age 53, unknown 25.2
2825 Male, age 18, unknown 22.7
2224 Female, age 72, unknown 21.7
2273 Male, age 74, both hemispheres 17.3
Red nucleus
nTPM: 21.8
2785 Male, age 18, unknown 28.8
2584 Male, age 75, left hemisphere 25.7
2588 Male, age 74, left hemisphere 23.8
2769 Male, age 72, unknown 23.7
2823 Male, age 76, right hemisphere 23.1
2227 Male, age 72, unknown 23.0
2725 Female, age 75, unknown 20.9
1904 Male, age 53, unknown 20.2
1865 Male, age 51, unknown 19.1
2503 Female, age 72, unknown 19.0
1954 Female, age 42, unknown 17.7
1821 Female, age 72, unknown 16.2
Substantia nigra
nTPM: 19.5
1941 Male, age 53, unknown 25.9
1889 Female, age 72, unknown 24.2
2590 Female, age 75, unknown 23.2
2583 Male, age 75, right hemisphere 22.0
2665 Male, age 74, both hemispheres 18.4
1851 Male, age 51, unknown 17.9
2409 Female, age 72, unknown 17.4
2699 Male, age 18, unknown 17.1
2241 Male, age 72, unknown 15.7
1916 Female, age 42, unknown 13.2
Superior colliculus
nTPM: 25.9
2087 Female, age 72, unknown 35.7
1913 Female, age 42, unknown 32.0
1895 Male, age 76, right hemisphere 30.5
1839 Male, age 51, unknown 29.9
1995 Male, age 72, unknown 26.9
2664 Male, age 75, both hemispheres 24.0
2587 Male, age 74, left hemisphere 23.6
1796 Male, age 53, unknown 20.5
2261 Male, age 18, unknown 18.2
2668 Female, age 75, unknown 17.5
Ventral tegmental area
nTPM: 16.4
2410 Female, age 72, unknown 19.2
2021 Male, age 53, unknown 18.6
1942 Male, age 51, unknown 16.5
2218 Male, age 76, both hemispheres 16.1
1915 Female, age 42, unknown 15.9
2223 Female, age 72, unknown 12.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 8.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 8.3
Samples: 139

Max nTPM: 38.1
Min nTPM: 1.7
Std nTPM: 4.8
Median nTPM: 7.3
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 38.1
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 32.9
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 26.6
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 19.3
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 17.4
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 16.2
GTEX-X585-0011-R2B-SM-46MVF 50-59 years, male 15.9
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 15.8
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 15.7
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 14.3
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 14.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 65.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 65.4
FF:10158-103A5 76 years, female 65.4

MIDBRAIN - Pig RNA-seqi
Average nTPM 9.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 4.4
Samples: 4

Max nTPM: 5.4
Min nTPM: 3.1
Sample A Female 5.2
Sample B Female 4.0
Sample C Male 5.4
Sample D Male 3.1
Midbrain
nTPM: 6.8
Samples: 4

Max nTPM: 11.7
Min nTPM: 1.9
Sample A Female 1.9
Sample B Female 5.1
Sample C Male 8.3
Sample D Male 11.7
Periaqueductal gray
nTPM: 9.9
Samples: 3

Max nTPM: 12.4
Min nTPM: 7.0
Sample B Female 7.0
Sample C Male 12.4
Sample D Male 10.2
Superior colliculi
nTPM: 9.0
Samples: 4

Max nTPM: 14.0
Min nTPM: 4.1
Sample A Female 9.4
Sample B Female 4.1
Sample C Male 8.4
Sample D Male 14.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 50.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 50.1
Samples: 4

Max nTPM: 54.1
Min nTPM: 46.7
Sample A Male 52.0
Sample B Male 47.4
Sample C Female 46.7
Sample D Female 54.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.2
69816655 Antisense, RP_050510_01_E10, Mouse strain C57BL/6J (56 days, male) 0.2

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