MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:31.2 nTPM
HPA Brain:55.1 nTPM
GTEx:31.2 nTPM
FANTOM5:173.6 Scaled Tags Per Million
Pig:71.0 nTPM
Mouse:123.2 nTPM
Allen mouse:0.8 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 55.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 50.5
2019 Male, age 18, unknown 54.4
2586 Male, age 75, left hemisphere 54.2
1870 Female, age 42, unknown 53.0
2666 Male, age 74, left hemisphere 52.7
1833 Male, age 53, unknown 50.5
1830 Male, age 51, unknown 48.9
2411 Female, age 72, unknown 48.9
1827 Male, age 72, unknown 48.6
2219 Male, age 76, both hemispheres 47.6
2828 Female, age 72, unknown 46.3
Dorsal raphe nucleus
nTPM: 47.2
2016 Female, age 72, unknown 49.8
2750 Male, age 76, both hemispheres 49.1
1828 Male, age 53, unknown 48.3
2298 Female, age 72, unknown 45.6
2047 Male, age 72, unknown 43.0
Inferior colliculus
nTPM: 49.2
2097 Female, age 72, unknown 52.1
1890 Male, age 53, unknown 49.6
2849 Male, age 72, unknown 48.0
1848 Female, age 42, unknown 46.9
Median raphe nucleus
nTPM: 48.7
2220 Male, age 76, midline 48.7
Periaquaductal grey, anterior
nTPM: 49.4
2502 Female, age 75, unknown 54.5
1947 Male, age 18, unknown 47.0
1795 Male, age 51, unknown 46.8
Periaquaductal grey, dorsal
nTPM: 48.3
1831 Male, age 72, unknown 50.4
2850 Male, age 76, both hemispheres 48.0
2464 Female, age 72, unknown 47.4
1840 Male, age 53, unknown 47.3
Periaquaductal grey, lateral
nTPM: 45.8
2053 Male, age 18, unknown 49.8
2272 Male, age 74, both hemispheres 46.6
2140 Male, age 76, both hemispheres 41.1
Pretectal area
nTPM: 52.2
1816 Male, age 51, unknown 60.9
1817 Female, age 42, unknown 58.9
1815 Male, age 53, unknown 57.3
2007 Male, age 72, unknown 56.2
1944 Female, age 72, unknown 55.6
2667 Female, age 75, unknown 50.5
2273 Male, age 74, both hemispheres 49.9
2407 Male, age 75, both hemispheres 49.0
2224 Female, age 72, unknown 48.7
2825 Male, age 18, unknown 45.4
2316 Male, age 76, right hemisphere 42.3
Red nucleus
nTPM: 55.1
2503 Female, age 72, unknown 62.6
1821 Female, age 72, unknown 60.3
1865 Male, age 51, unknown 58.6
1904 Male, age 53, unknown 57.6
1954 Female, age 42, unknown 55.8
2785 Male, age 18, unknown 54.7
2725 Female, age 75, unknown 53.9
2227 Male, age 72, unknown 52.3
2769 Male, age 72, unknown 52.2
2823 Male, age 76, right hemisphere 51.2
2588 Male, age 74, left hemisphere 51.0
2584 Male, age 75, left hemisphere 50.6
Substantia nigra
nTPM: 53.2
1916 Female, age 42, unknown 56.0
2699 Male, age 18, unknown 55.7
1889 Female, age 72, unknown 55.3
2241 Male, age 72, unknown 54.9
2409 Female, age 72, unknown 53.8
1851 Male, age 51, unknown 52.7
2583 Male, age 75, right hemisphere 51.9
2665 Male, age 74, both hemispheres 51.5
2590 Female, age 75, unknown 50.1
1941 Male, age 53, unknown 50.0
Superior colliculus
nTPM: 52.0
1913 Female, age 42, unknown 58.1
1995 Male, age 72, unknown 57.1
2587 Male, age 74, left hemisphere 55.2
2664 Male, age 75, both hemispheres 52.5
2668 Female, age 75, unknown 52.2
2087 Female, age 72, unknown 51.6
2261 Male, age 18, unknown 50.8
1796 Male, age 53, unknown 50.6
1839 Male, age 51, unknown 48.6
1895 Male, age 76, right hemisphere 43.6
Ventral tegmental area
nTPM: 50.2
2223 Female, age 72, unknown 59.9
2410 Female, age 72, unknown 52.4
1915 Female, age 42, unknown 48.0
2218 Male, age 76, both hemispheres 48.0
1942 Male, age 51, unknown 46.8
2021 Male, age 53, unknown 46.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 31.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 31.2
Samples: 139

Max nTPM: 52.2
Min nTPM: 3.4
Std nTPM: 8.7
Median nTPM: 30.2
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 52.2
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 51.1
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 49.3
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 49.2
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 45.9
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 45.7
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 45.7
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 45.5
GTEX-11UD1-0011-R2b-SM-5BC6O 40-49 years, female 45.4
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 44.5
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 43.8
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 173.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 173.6
FF:10158-103A5 76 years, female 173.6

MIDBRAIN - Pig RNA-seqi
Average nTPM 71.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 59.0
Samples: 4

Max nTPM: 63.2
Min nTPM: 53.8
Sample A Female 61.2
Sample B Female 53.8
Sample C Male 57.8
Sample D Male 63.2
Midbrain
nTPM: 71.0
Samples: 4

Max nTPM: 85.7
Min nTPM: 60.3
Sample A Female 85.7
Sample B Female 65.7
Sample C Male 72.1
Sample D Male 60.3
Periaqueductal gray
nTPM: 56.5
Samples: 3

Max nTPM: 57.0
Min nTPM: 56.0
Sample B Female 56.6
Sample C Male 57.0
Sample D Male 56.0
Superior colliculi
nTPM: 64.5
Samples: 4

Max nTPM: 71.8
Min nTPM: 57.6
Sample A Female 62.6
Sample B Female 57.6
Sample C Male 71.8
Sample D Male 66.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 123.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 123.2
Samples: 4

Max nTPM: 126.9
Min nTPM: 117.7
Sample A Male 117.7
Sample B Male 126.9
Sample C Female 122.6
Sample D Female 125.7

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.8
69134616 Antisense, RP_050321_03_B10, Mouse strain C57BL/6J (56 days, male) 0.8

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