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                                  BRAIN MEDULLA OBLONGATA Show tissue menu
                                  AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
                                  MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
                                  ANTIBODIES
                                  AND
                                  VALIDATION
                                  Brain proteome
                                  Medulla oblongata
                                  MEDULLA OBLONGATA - Expression summary
                                  Protein expressioni

                                  On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

                                  Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

                                  If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

                                  No data
                                  RNA expressioni

                                  A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

                                  The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

                                  Scroll down to view mRNA expression data in more detail.
                                  HPA Brain:73.3 nTPM
                                  FANTOM5:85.7 Scaled Tags Per Million
                                  Pig:72.6 nTPM
                                  Allen mouse:11.8 Expression energy

                                  MEDULLA OBLONGATA - HPA Brain RNA-seq
                                  Max nTPM 73.3
                                  Sample id Sample description nTPM
                                  Area postrema
                                  nTPM: 54.7
                                  2799 Male, age 61, both hemispheres 62.3
                                  2054 Male, age 76, both hemispheres 59.2
                                  2306 Male, age 80, both hemispheres 42.6
                                  Dorsal medullary reticular nucleus
                                  nTPM: 62.9
                                  2040 Female, age 85, both hemispheres 81.2
                                  2373 Male, age 61, both hemispheres 55.5
                                  2088 Male, age 76, both hemispheres 52.0
                                  Dorsal motor vagal complex
                                  nTPM: 61.0
                                  2133 Female, age 91, both hemispheres 80.7
                                  2000 Male, age 74, unknown 72.9
                                  2844 Male, age 55, unknown 64.2
                                  2813 Female, age 72, unknown 63.7
                                  2643 Male, age 74, both hemispheres 57.5
                                  2797 Male, age 61, both hemispheres 57.5
                                  2185 Male, age 76, both hemispheres 51.6
                                  2807 Female, age 85, both hemispheres 39.7
                                  Gigantocellular reticular nuclei, medullary
                                  nTPM: 63.7
                                  2462 Male, age 74, both hemispheres 76.0
                                  1876 Female, age 85, both hemispheres 73.9
                                  2387 Female, age 91, both hemispheres 62.7
                                  2022 Male, age 76, right hemisphere 60.3
                                  2314 Male, age 61, both hemispheres 57.8
                                  2310 Male, age 80, both hemispheres 51.6
                                  Gigantocellular reticular nuclei, pars
                                  nTPM: 57.1
                                  2168 Male, age 76, both hemispheres 69.2
                                  2084 Female, age 85, both hemispheres 68.7
                                  2336 Male, age 61, both hemispheres 61.0
                                  2706 Male, age 80, both hemispheres 44.5
                                  2330 Male, age 80, both hemispheres 42.3
                                  Inferior olive
                                  nTPM: 61.8
                                  2563 Male, age 74, both hemispheres 75.4
                                  2085 Female, age 85, both hemispheres 70.6
                                  2178 Male, age 61, both hemispheres 60.4
                                  2379 Male, age 80, both hemispheres 54.5
                                  2628 Female, age 91, both hemispheres 48.3
                                  Lateral medullary reticular nucleus
                                  nTPM: 58.5
                                  2044 Male, age 76, both hemispheres 69.0
                                  2804 Female, age 91, both hemispheres 64.3
                                  2305 Male, age 74, both hemispheres 60.8
                                  2190 Female, age 85, both hemispheres 59.2
                                  2374 Male, age 61, both hemispheres 55.0
                                  2852 Male, age 80, both hemispheres 42.6
                                  Medial olivary nucleus
                                  nTPM: 55.6
                                  2138 Female, age 91, both hemispheres 65.5
                                  1962 Male, age 76, both hemispheres 58.8
                                  1943 Male, age 61, both hemispheres 51.7
                                  2851 Male, age 80, both hemispheres 46.3
                                  Medial vestibular nucleus
                                  nTPM: 69.8
                                  2134 Male, age 76, both hemispheres 79.4
                                  2743 Female, age 85, both hemispheres 71.1
                                  2803 Female, age 91, both hemispheres 70.6
                                  2093 Male, age 80, both hemispheres 67.9
                                  2801 Male, age 74, both hemispheres 67.3
                                  2624 Male, age 61, both hemispheres 62.6
                                  Motor hypoglossal nucleus
                                  nTPM: 64.2
                                  2125 Female, age 91, both hemispheres 77.6
                                  2461 Male, age 61, both hemispheres 71.2
                                  2132 Female, age 85, both hemispheres 66.2
                                  2277 Male, age 76, both hemispheres 61.4
                                  2182 Male, age 80, both hemispheres 44.4
                                  Nucleus ambiguus
                                  nTPM: 49.2
                                  2071 Male, age 76, both hemispheres 59.7
                                  2096 Female, age 85, both hemispheres 38.7
                                  Nucleus cuneatus
                                  nTPM: 52.5
                                  2564 Male, age 74, both hemispheres 62.8
                                  2376 Male, age 61, both hemispheres 61.8
                                  2131 Male, age 76, both hemispheres 59.4
                                  2562 Male, age 61, both hemispheres 57.3
                                  2100 Male, age 76, both hemispheres 50.6
                                  2805 Female, age 91, both hemispheres 49.4
                                  2380 Male, age 80, both hemispheres 46.4
                                  2381 Male, age 80, both hemispheres 45.0
                                  2808 Female, age 85, both hemispheres 40.0
                                  Nucleus gracilis
                                  nTPM: 45.6
                                  2627 Male, age 74, both hemispheres 62.1
                                  2382 Male, age 80, both hemispheres 38.1
                                  2299 Female, age 85, both hemispheres 36.6
                                  Nucleus raphe obscurus
                                  nTPM: 58.1
                                  2845 Female, age 85, midline 60.9
                                  2800 Male, age 61, midline 60.7
                                  2142 Male, age 76, midline 52.8
                                  Nucleus raphe pallidus
                                  nTPM: 62.0
                                  1924 Male, age 61, midline 67.2
                                  2183 Male, age 80, midline 65.6
                                  2145 Male, age 76, midline 53.2
                                  Nucleus tractus solitarii
                                  nTPM: 67.5
                                  2144 Female, age 91, right hemisphere 116.5
                                  2656 Male, age 76, both hemispheres 62.4
                                  2191 Female, age 85, both hemispheres 50.9
                                  2307 Male, age 80, both hemispheres 40.2
                                  Parvicellular reticular nuclei
                                  nTPM: 62.9
                                  2119 Male, age 80, both hemispheres 67.4
                                  2095 Male, age 76, both hemispheres 64.5
                                  2558 Male, age 74, both hemispheres 56.8
                                  Parvicellular reticular nuclei, medullary
                                  nTPM: 68.0
                                  2091 Female, age 85, both hemispheres 72.2
                                  2189 Female, age 91, both hemispheres 71.8
                                  2181 Male, age 80, left hemisphere 60.1
                                  Peritrigeminal nucleus
                                  nTPM: 63.9
                                  2179 Male, age 61, both hemispheres 67.7
                                  2136 Male, age 76, both hemispheres 65.3
                                  2067 Female, age 85, both hemispheres 58.8
                                  Prepositus hypoglossal nucleus
                                  nTPM: 67.2
                                  2855 Female, age 85, right hemisphere 74.8
                                  2086 Male, age 80, both hemispheres 59.7
                                  Spinal trigeminal nucleus, caudal
                                  nTPM: 59.8
                                  2390 Female, age 91, both hemispheres 86.0
                                  2447 Male, age 76, both hemispheres 63.6
                                  2312 Male, age 61, both hemispheres 51.3
                                  2308 Male, age 80, both hemispheres 49.3
                                  2642 Male, age 74, both hemispheres 48.8
                                  Spinal trigeminal nucleus, interpolar
                                  nTPM: 73.3
                                  2625 Male, age 61, both hemispheres 91.6
                                  2066 Male, age 76, right hemisphere 78.5
                                  2033 Male, age 80, both hemispheres 69.1
                                  2386 Female, age 85, both hemispheres 65.4
                                  2389 Female, age 91, both hemispheres 62.0
                                  Spinal vestibular nucleus
                                  nTPM: 65.0
                                  2806 Female, age 85, both hemispheres 72.3
                                  2186 Female, age 91, both hemispheres 69.9
                                  2780 Male, age 80, both hemispheres 63.9
                                  2384 Male, age 74, both hemispheres 62.9
                                  2748 Male, age 76, both hemispheres 61.4
                                  2796 Male, age 61, both hemispheres 59.3
                                  Superior vestibular nucleus
                                  nTPM: 69.5
                                  2383 Male, age 74, both hemispheres 80.8
                                  2015 Male, age 80, both hemispheres 66.4
                                  2061 Male, age 76, both hemispheres 61.4
                                  Ventral medullary reticular nucleus
                                  nTPM: 60.3
                                  2372 Male, age 61, both hemispheres 66.4
                                  2060 Male, age 76, both hemispheres 54.3
                                  Ventrolateral medulla, A1-C1 cell groups
                                  nTPM: 61.8
                                  2741 Female, age 85, both hemispheres 69.8
                                  1986 Male, age 76, both hemispheres 66.8
                                  2180 Male, age 61, both hemispheres 66.7
                                  2302 Female, age 91, both hemispheres 59.4
                                  2118 Male, age 80, both hemispheres 46.5

                                  MEDULLA OBLONGATA - FANTOM5 CAGEi

                                  RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

                                  Max Scaled Tags Per Million 85.7
                                  FANTOM5 sample id Sample description Scaled Tags Per Million
                                  Medulla oblongata
                                  Scaled Tags Per Million: 85.7
                                  FF:10155-103A2 76 years, female 97.1
                                  FF:10038-101F2 18-64 years, mixed 88.2
                                  FF:10174-103C3 60 years, female 71.8

                                  MEDULLA OBLONGATA - Pig RNA-seqi

                                  RNA-seq data obtained from pig brain is reported as nTPM .

                                  Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
                                  Average nTPM 72.6
                                  Pig sample Sample description nTPM
                                  68.169.173.667.870.001020304050607080
                                  68.169.173.667.870.001020304050607080
                                  Medulla oblongata
                                  nTPM: 72.6
                                  Samples: 4

                                  Max nTPM: 84.4
                                  Min nTPM: 67.8
                                  Sample A Female 84.4
                                  Sample B Female 70.0
                                  Sample C Male 67.8
                                  Sample D Male 68.2

                                  MEDULLA OBLONGATA - Allen Mouse ISHi

                                  In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

                                  Max Expression energy 11.8
                                  Allen experiment id Experiment description Expression energy
                                  Medulla oblongata
                                  Expression energy: 11.8
                                  69782073 Antisense, RP_050505_02_C06, Mouse strain C57BL/6J (56 days, male) 11.8

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