MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:43.8 nTPM
HPA Brain:194.1 nTPM
GTEx:43.8 nTPM
FANTOM5:77.2 Scaled Tags Per Million
Pig:69.8 nTPM
Mouse:122.8 nTPM
Allen mouse:12.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 194.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 114.6
2586 Male, age 75, left hemisphere 148.3
2666 Male, age 74, left hemisphere 134.3
1827 Male, age 72, unknown 128.1
2828 Female, age 72, unknown 124.9
2411 Female, age 72, unknown 119.7
1870 Female, age 42, unknown 107.6
1833 Male, age 53, unknown 107.3
2019 Male, age 18, unknown 92.7
1830 Male, age 51, unknown 91.8
2219 Male, age 76, both hemispheres 91.8
Dorsal raphe nucleus
nTPM: 137.9
2047 Male, age 72, unknown 168.4
2298 Female, age 72, unknown 167.5
2750 Male, age 76, both hemispheres 128.0
1828 Male, age 53, unknown 125.9
2016 Female, age 72, unknown 99.9
Inferior colliculus
nTPM: 107.6
1848 Female, age 42, unknown 125.5
2849 Male, age 72, unknown 125.4
2097 Female, age 72, unknown 90.3
1890 Male, age 53, unknown 89.2
Median raphe nucleus
nTPM: 194.1
2220 Male, age 76, midline 194.1
Periaquaductal grey, anterior
nTPM: 136.7
1795 Male, age 51, unknown 155.4
1947 Male, age 18, unknown 149.5
2502 Female, age 75, unknown 105.1
Periaquaductal grey, dorsal
nTPM: 132.2
2850 Male, age 76, both hemispheres 153.6
1840 Male, age 53, unknown 149.9
2464 Female, age 72, unknown 120.0
1831 Male, age 72, unknown 105.1
Periaquaductal grey, lateral
nTPM: 146.5
2140 Male, age 76, both hemispheres 157.7
2272 Male, age 74, both hemispheres 144.8
2053 Male, age 18, unknown 137.0
Pretectal area
nTPM: 137.1
1944 Female, age 72, unknown 181.1
1816 Male, age 51, unknown 172.8
2007 Male, age 72, unknown 144.6
1815 Male, age 53, unknown 144.0
2273 Male, age 74, both hemispheres 139.8
2224 Female, age 72, unknown 137.5
2667 Female, age 75, unknown 132.7
2825 Male, age 18, unknown 126.4
1817 Female, age 42, unknown 124.1
2316 Male, age 76, right hemisphere 111.5
2407 Male, age 75, both hemispheres 94.0
Red nucleus
nTPM: 88.3
2725 Female, age 75, unknown 153.9
2584 Male, age 75, left hemisphere 114.7
2588 Male, age 74, left hemisphere 107.3
2785 Male, age 18, unknown 92.2
1821 Female, age 72, unknown 85.5
2823 Male, age 76, right hemisphere 79.2
2769 Male, age 72, unknown 77.3
2227 Male, age 72, unknown 75.1
2503 Female, age 72, unknown 73.1
1954 Female, age 42, unknown 69.2
1904 Male, age 53, unknown 66.6
1865 Male, age 51, unknown 65.3
Substantia nigra
nTPM: 123.7
1916 Female, age 42, unknown 155.5
1851 Male, age 51, unknown 143.2
1941 Male, age 53, unknown 135.7
2241 Male, age 72, unknown 130.8
1889 Female, age 72, unknown 127.9
2409 Female, age 72, unknown 124.5
2583 Male, age 75, right hemisphere 114.0
2699 Male, age 18, unknown 106.2
2665 Male, age 74, both hemispheres 100.5
2590 Female, age 75, unknown 98.6
Superior colliculus
nTPM: 113.3
2261 Male, age 18, unknown 148.8
2087 Female, age 72, unknown 146.7
1796 Male, age 53, unknown 144.3
2664 Male, age 75, both hemispheres 116.0
1839 Male, age 51, unknown 108.3
1895 Male, age 76, right hemisphere 102.0
2668 Female, age 75, unknown 99.8
1913 Female, age 42, unknown 94.8
1995 Male, age 72, unknown 91.0
2587 Male, age 74, left hemisphere 81.7
Ventral tegmental area
nTPM: 121.5
2218 Male, age 76, both hemispheres 137.6
1915 Female, age 42, unknown 135.3
2410 Female, age 72, unknown 124.7
2021 Male, age 53, unknown 118.4
1942 Male, age 51, unknown 115.3
2223 Female, age 72, unknown 97.9

MIDBRAIN - GTEx RNA-seqi
Average nTPM 43.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 43.8
Samples: 139

Max nTPM: 122.4
Min nTPM: 8.3
Std nTPM: 22.4
Median nTPM: 40.6
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 122.4
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 99.1
GTEX-14C5O-0011-R2a-SM-5ZZV2 60-69 years, male 96.6
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 93.5
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 91.6
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 89.5
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 88.6
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 88.2
GTEX-15CHQ-0011-R2b-SM-6AJAD 60-69 years, male 88.1
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 85.2
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 82.7
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 77.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 77.2
FF:10158-103A5 76 years, female 77.2

MIDBRAIN - Pig RNA-seqi
Average nTPM 69.8
Pig sample Sample description nTPM
Substantia nigra
nTPM: 66.8
Samples: 4

Max nTPM: 91.4
Min nTPM: 39.9
Sample A Female 91.4
Sample B Female 49.0
Sample C Male 87.0
Sample D Male 39.9
Midbrain
nTPM: 69.8
Samples: 4

Max nTPM: 111.5
Min nTPM: 49.2
Sample A Female 49.2
Sample B Female 50.6
Sample C Male 111.5
Sample D Male 68.0
Periaqueductal gray
nTPM: 49.7
Samples: 3

Max nTPM: 62.2
Min nTPM: 38.7
Sample B Female 48.2
Sample C Male 62.2
Sample D Male 38.7
Superior colliculi
nTPM: 69.0
Samples: 4

Max nTPM: 98.2
Min nTPM: 42.0
Sample A Female 70.6
Sample B Female 42.0
Sample C Male 98.2
Sample D Male 65.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 122.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 122.9
Samples: 4

Max nTPM: 127.9
Min nTPM: 113.6
Sample A Male 113.6
Sample B Male 125.9
Sample C Female 124.0
Sample D Female 127.9

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 12.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 12.1
77620429 Antisense, RP_070205_01_H11, Mouse strain C57BL/6J (56 days, male) 16.1
79490112 Antisense, RP_070205_01_H11, Mouse strain C57BL/6J (56 days, male) 15.3
68196975 Antisense, RP_040928_01_A05, Mouse strain C57BL/6J (56 days, male) 8.0

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