MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:270.8 nTPM
HPA Brain:233.0 nTPM
GTEx:270.8 nTPM
FANTOM5:507.1 Scaled Tags Per Million
Pig:379.3 nTPM
Mouse:176.9 nTPM
Allen mouse:2.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 233.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 211.8
1870 Female, age 42, unknown 256.1
2411 Female, age 72, unknown 228.7
1833 Male, age 53, unknown 228.2
1830 Male, age 51, unknown 224.5
2666 Male, age 74, left hemisphere 219.0
2828 Female, age 72, unknown 217.6
2019 Male, age 18, unknown 214.5
1827 Male, age 72, unknown 209.2
2219 Male, age 76, both hemispheres 163.5
2586 Male, age 75, left hemisphere 156.6
Dorsal raphe nucleus
nTPM: 222.0
2016 Female, age 72, unknown 242.4
2750 Male, age 76, both hemispheres 229.5
2298 Female, age 72, unknown 224.5
1828 Male, age 53, unknown 213.2
2047 Male, age 72, unknown 200.4
Inferior colliculus
nTPM: 187.5
2097 Female, age 72, unknown 195.7
1848 Female, age 42, unknown 191.7
1890 Male, age 53, unknown 188.0
2849 Male, age 72, unknown 174.7
Median raphe nucleus
nTPM: 219.3
2220 Male, age 76, midline 219.3
Periaquaductal grey, anterior
nTPM: 201.8
1947 Male, age 18, unknown 213.1
2502 Female, age 75, unknown 202.4
1795 Male, age 51, unknown 189.8
Periaquaductal grey, dorsal
nTPM: 211.9
2850 Male, age 76, both hemispheres 249.8
1831 Male, age 72, unknown 214.1
2464 Female, age 72, unknown 195.6
1840 Male, age 53, unknown 188.1
Periaquaductal grey, lateral
nTPM: 203.7
2053 Male, age 18, unknown 208.2
2140 Male, age 76, both hemispheres 208.0
2272 Male, age 74, both hemispheres 194.8
Pretectal area
nTPM: 203.8
1815 Male, age 53, unknown 227.6
2224 Female, age 72, unknown 222.5
2667 Female, age 75, unknown 219.9
1817 Female, age 42, unknown 218.0
2316 Male, age 76, right hemisphere 213.0
2273 Male, age 74, both hemispheres 200.5
2825 Male, age 18, unknown 195.7
1944 Female, age 72, unknown 194.9
2007 Male, age 72, unknown 189.8
1816 Male, age 51, unknown 188.7
2407 Male, age 75, both hemispheres 170.9
Red nucleus
nTPM: 233.0
1821 Female, age 72, unknown 284.5
1904 Male, age 53, unknown 267.0
1954 Female, age 42, unknown 260.6
1865 Male, age 51, unknown 256.0
2503 Female, age 72, unknown 243.5
2823 Male, age 76, right hemisphere 240.3
2227 Male, age 72, unknown 231.9
2769 Male, age 72, unknown 229.0
2725 Female, age 75, unknown 227.8
2785 Male, age 18, unknown 215.3
2588 Male, age 74, left hemisphere 184.1
2584 Male, age 75, left hemisphere 156.1
Substantia nigra
nTPM: 224.7
2699 Male, age 18, unknown 247.2
1851 Male, age 51, unknown 241.4
2241 Male, age 72, unknown 232.6
1916 Female, age 42, unknown 232.1
2665 Male, age 74, both hemispheres 228.6
1889 Female, age 72, unknown 226.8
2409 Female, age 72, unknown 223.5
2590 Female, age 75, unknown 217.6
1941 Male, age 53, unknown 206.2
2583 Male, age 75, right hemisphere 191.4
Superior colliculus
nTPM: 204.9
1913 Female, age 42, unknown 271.6
1995 Male, age 72, unknown 243.9
2587 Male, age 74, left hemisphere 230.9
1839 Male, age 51, unknown 200.3
2668 Female, age 75, unknown 194.1
1796 Male, age 53, unknown 186.7
2087 Female, age 72, unknown 186.4
2261 Male, age 18, unknown 184.4
1895 Male, age 76, right hemisphere 182.5
2664 Male, age 75, both hemispheres 167.7
Ventral tegmental area
nTPM: 229.2
2223 Female, age 72, unknown 253.6
2410 Female, age 72, unknown 240.6
1915 Female, age 42, unknown 228.1
2218 Male, age 76, both hemispheres 225.3
2021 Male, age 53, unknown 221.2
1942 Male, age 51, unknown 206.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 270.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 270.8
Samples: 139

Max nTPM: 485.9
Min nTPM: 137.1
Std nTPM: 59.1
Median nTPM: 264.2
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 485.9
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 416.0
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 411.0
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 403.6
GTEX-1B8SG-0011-R2b-SM-79OOT 50-59 years, male 391.8
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 390.9
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 388.7
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 368.9
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 367.4
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 364.9
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 364.5
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 507.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 507.1
FF:10158-103A5 76 years, female 507.1

MIDBRAIN - Pig RNA-seqi
Average nTPM 379.3
Pig sample Sample description nTPM
Substantia nigra
nTPM: 379.3
Samples: 4

Max nTPM: 419.1
Min nTPM: 337.2
Sample A Female 418.0
Sample B Female 337.2
Sample C Male 343.0
Sample D Male 419.1
Midbrain
nTPM: 371.3
Samples: 4

Max nTPM: 639.1
Min nTPM: 234.0
Sample A Female 639.1
Sample B Female 351.8
Sample C Male 260.1
Sample D Male 234.0
Periaqueductal gray
nTPM: 297.7
Samples: 3

Max nTPM: 303.9
Min nTPM: 288.0
Sample B Female 301.3
Sample C Male 303.9
Sample D Male 288.0
Superior colliculi
nTPM: 353.9
Samples: 4

Max nTPM: 390.2
Min nTPM: 316.3
Sample A Female 390.2
Sample B Female 384.9
Sample C Male 316.3
Sample D Male 324.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 176.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 176.9
Samples: 4

Max nTPM: 184.3
Min nTPM: 171.2
Sample A Male 184.3
Sample B Male 177.8
Sample C Female 171.2
Sample D Female 174.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 2.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.1
73606534 Antisense, RP_051130_01_B05, Mouse strain C57BL/6J (56 days, male) 2.1

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