HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Low
Neuronal cells: High
RNA expressioni
Consensus:280.5 nTPM
HPA Brain:476.5 nTPM
GTEx:280.5 nTPM
FANTOM5:333.2 Scaled Tags Per Million
Pig:730.9 nTPM
Mouse:617.6 nTPM
Allen mouse:14.9 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA035611Antibody CAB037073
Glial cells LowLow
Neuronal cells HighHigh





HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 476.5
Sample id Sample description nTPM
Hippocampus
nTPM: 346.6
1898 Male, age 80, left hemisphere 463.8
2621 Female, age 67, right hemisphere 385.1
1855 Male, age 76, left hemisphere 380.1
2148 Female, age 91, left hemisphere 314.4
1911 Female, age 85, right hemisphere 306.9
2529 Female, age 94, left hemisphere 229.5
Dentate gyrus
nTPM: 370.7
1927 Female, age 91, both hemispheres 602.8
2010 Male, age 76, both hemispheres 464.0
2530 Female, age 94, left hemisphere 334.0
2246 Female, age 85, both hemispheres 302.6
2528 Male, age 74, both hemispheres 282.1
2531 Female, age 67, both hemispheres 238.6
Entorhinal gyrus
nTPM: 240.4
2764 Male, age 80, right hemisphere 301.8
1938 Female, age 85, left hemisphere 295.7
1787 Male, age 76, left hemisphere 231.1
2117 Female, age 91, right hemisphere 209.9
2613 Female, age 94, left hemisphere 209.7
2686 Male, age 75, right hemisphere 194.5
Hippocampus, CA1
nTPM: 476.5
2749 Male, age 80, left hemisphere 1019.8
1873 Female, age 85, both hemispheres 467.5
2045 Male, age 76, both hemispheres 346.9
2527 Male, age 74, both hemispheres 314.1
2082 Female, age 91, right hemisphere 233.8
Hippocampus, CA2
nTPM: 394.6
1963 Male, age 80, left hemisphere 763.2
1892 Male, age 76, both hemispheres 581.1
2249 Male, age 74, both hemispheres 325.0
1940 Female, age 85, left hemisphere 250.2
2113 Female, age 91, right hemisphere 227.6
2437 Female, age 94, left hemisphere 220.6
Hippocampus, CA3
nTPM: 385.3
2137 Male, age 80, left hemisphere 795.5
1867 Male, age 76, both hemispheres 426.7
2436 Male, age 74, both hemispheres 305.1
2620 Female, age 94, left hemisphere 302.9
1891 Female, age 85, both hemispheres 248.6
2861 Female, age 67, both hemispheres 232.9
Parahippocampal cortex
nTPM: 287.7
2245 Female, age 91, both hemispheres 376.0
1850 Male, age 80, both hemispheres 372.9
2532 Female, age 72, left hemisphere 305.2
1933 Female, age 85, both hemispheres 288.3
2693 Female, age 94, both hemispheres 280.9
2250 Female, age 67, right hemisphere 278.3
1990 Female, age 91, right hemisphere 274.5
2018 Male, age 76, both hemispheres 268.6
2622 Female, age 67, right hemisphere 228.8
2692 Male, age 74, both hemispheres 203.2
Perirhinal gyrus
nTPM: 352.7
1794 Male, age 80, right hemisphere 395.6
1841 Female, age 85, right hemisphere 373.8
1847 Female, age 91, left hemisphere 373.2
2521 Female, age 94, right hemisphere 343.9
2848 Male, age 76, right hemisphere 276.9
Subiculum
nTPM: 284.1
1901 Male, age 80, both hemispheres 425.7
2042 Male, age 76, both hemispheres 319.9
1977 Female, age 85, both hemispheres 293.1
2729 Female, age 91, right hemisphere 234.1
2619 Male, age 74, both hemispheres 218.3
2438 Female, age 94, left hemisphere 213.4

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 280.5
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 280.5
Samples: 197

Max nTPM: 685.5
Min nTPM: 81.6
Std nTPM: 130.1
Median nTPM: 263.3
GTEX-N7MS-0011-R1a-SM-2HMJG 60-69 years, male 685.5
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 602.5
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 597.4
GTEX-YFC4-0011-R1a-SM-4V6EH 40-49 years, female 572.8
GTEX-14JIY-0011-R1a-SM-68713 60-69 years, male 557.9
GTEX-13JUV-0011-R1a-SM-5LZY4 40-49 years, female 557.5
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 540.7
GTEX-Q2AG-0011-R1A-SM-2HMJI 40-49 years, female 529.9
GTEX-1CB4G-0011-R1b-SM-9QEHT 60-69 years, male 529.7
GTEX-14PN4-0011-R1b-SM-69LP8 50-59 years, male 522.6
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 518.6
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 333.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 333.2
FF:10169-103B7 60 years, female 446.5
FF:10153-102I9 76 years, female 219.8

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 730.9
Pig sample Sample description nTPM
Subiculum
nTPM: 353.8
Samples: 4

Max nTPM: 457.7
Min nTPM: 308.4
Sample A Female 457.7
Sample B Female 322.2
Sample C Male 326.9
Sample D Male 308.4
Dorsal hippocampus
nTPM: 730.9
Samples: 4

Max nTPM: 1004.4
Min nTPM: 509.9
Sample A Female 1004.4
Sample B Female 785.3
Sample C Male 509.9
Sample D Male 624.1
Entorhinal cortex
nTPM: 394.9
Samples: 4

Max nTPM: 465.2
Min nTPM: 330.0
Sample A Female 408.1
Sample B Female 465.2
Sample C Male 376.2
Sample D Male 330.0
Ventral hippocampus
nTPM: 487.5
Samples: 4

Max nTPM: 780.7
Min nTPM: 339.7
Sample A Female 438.9
Sample B Female 339.7
Sample C Male 390.7
Sample D Male 780.7

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 617.6
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 502.5
Samples: 4

Max nTPM: 530.4
Min nTPM: 485.8
Sample A Male 489.1
Sample B Male 504.5
Sample C Female 530.4
Sample D Female 485.8
Hippocampal formation
nTPM: 617.6
Samples: 4

Max nTPM: 669.1
Min nTPM: 550.4
Sample A Male 669.1
Sample B Male 607.5
Sample C Female 643.3
Sample D Female 550.4

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 14.9
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 14.9
1262 Antisense, RP_040324_01_F06, Mouse strain C57BL/6J (56 days, male) 14.9
1261 Antisense, RP_040324_01_F06, Mouse strain C57BL/6J (56 days, male) 13.7

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