MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:155.9 nTPM
HPA Brain:188.5 nTPM
GTEx:155.9 nTPM
FANTOM5:109.5 Scaled Tags Per Million
Pig:331.1 nTPM
Mouse:461.6 nTPM
Allen mouse:10.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 188.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 155.8
2586 Male, age 75, left hemisphere 183.0
2411 Female, age 72, unknown 170.1
1827 Male, age 72, unknown 166.6
1870 Female, age 42, unknown 162.6
2019 Male, age 18, unknown 162.3
1833 Male, age 53, unknown 150.5
2219 Male, age 76, both hemispheres 149.9
1830 Male, age 51, unknown 149.5
2828 Female, age 72, unknown 133.6
2666 Male, age 74, left hemisphere 130.1
Dorsal raphe nucleus
nTPM: 167.4
2298 Female, age 72, unknown 186.7
1828 Male, age 53, unknown 172.8
2047 Male, age 72, unknown 166.8
2016 Female, age 72, unknown 160.3
2750 Male, age 76, both hemispheres 150.7
Inferior colliculus
nTPM: 168.8
2097 Female, age 72, unknown 176.3
2849 Male, age 72, unknown 171.9
1848 Female, age 42, unknown 170.8
1890 Male, age 53, unknown 156.2
Median raphe nucleus
nTPM: 169.5
2220 Male, age 76, midline 169.5
Periaquaductal grey, anterior
nTPM: 172.1
1947 Male, age 18, unknown 188.6
1795 Male, age 51, unknown 166.0
2502 Female, age 75, unknown 161.7
Periaquaductal grey, dorsal
nTPM: 169.7
1840 Male, age 53, unknown 200.4
2850 Male, age 76, both hemispheres 186.6
1831 Male, age 72, unknown 152.2
2464 Female, age 72, unknown 139.6
Periaquaductal grey, lateral
nTPM: 169.9
2272 Male, age 74, both hemispheres 198.6
2140 Male, age 76, both hemispheres 164.0
2053 Male, age 18, unknown 147.3
Pretectal area
nTPM: 176.9
2273 Male, age 74, both hemispheres 218.4
2224 Female, age 72, unknown 194.6
1816 Male, age 51, unknown 185.8
2007 Male, age 72, unknown 183.5
1817 Female, age 42, unknown 180.3
2407 Male, age 75, both hemispheres 177.6
1944 Female, age 72, unknown 172.4
2825 Male, age 18, unknown 167.5
2667 Female, age 75, unknown 165.8
1815 Male, age 53, unknown 159.0
2316 Male, age 76, right hemisphere 140.3
Red nucleus
nTPM: 130.2
2725 Female, age 75, unknown 170.9
1821 Female, age 72, unknown 149.3
2584 Male, age 75, left hemisphere 146.3
2785 Male, age 18, unknown 144.5
2227 Male, age 72, unknown 127.3
1954 Female, age 42, unknown 125.5
2769 Male, age 72, unknown 124.9
2503 Female, age 72, unknown 120.6
1865 Male, age 51, unknown 118.3
1904 Male, age 53, unknown 113.8
2588 Male, age 74, left hemisphere 112.5
2823 Male, age 76, right hemisphere 108.8
Substantia nigra
nTPM: 188.5
2241 Male, age 72, unknown 227.3
1916 Female, age 42, unknown 221.9
1941 Male, age 53, unknown 212.6
1851 Male, age 51, unknown 208.7
2583 Male, age 75, right hemisphere 187.7
1889 Female, age 72, unknown 181.6
2699 Male, age 18, unknown 176.1
2409 Female, age 72, unknown 174.0
2590 Female, age 75, unknown 154.2
2665 Male, age 74, both hemispheres 140.5
Superior colliculus
nTPM: 160.3
2664 Male, age 75, both hemispheres 212.9
1796 Male, age 53, unknown 173.0
1839 Male, age 51, unknown 168.5
2587 Male, age 74, left hemisphere 168.5
2668 Female, age 75, unknown 163.4
2261 Male, age 18, unknown 157.1
2087 Female, age 72, unknown 150.1
1895 Male, age 76, right hemisphere 145.5
1913 Female, age 42, unknown 132.4
1995 Male, age 72, unknown 131.9
Ventral tegmental area
nTPM: 180.4
2223 Female, age 72, unknown 200.8
1915 Female, age 42, unknown 197.2
2410 Female, age 72, unknown 177.3
2218 Male, age 76, both hemispheres 175.7
1942 Male, age 51, unknown 167.8
2021 Male, age 53, unknown 163.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 155.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 155.9
Samples: 139

Max nTPM: 320.7
Min nTPM: 83.0
Std nTPM: 38.7
Median nTPM: 154.5
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 320.7
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 267.8
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 262.6
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 261.8
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 257.3
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 250.5
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 233.0
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 225.2
GTEX-1EU9M-0011-R2b-SM-9QEH7 60-69 years, male 224.6
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 220.0
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 208.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 109.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 109.5
FF:10158-103A5 76 years, female 109.5

MIDBRAIN - Pig RNA-seqi
Average nTPM 331.1
Pig sample Sample description nTPM
Substantia nigra
nTPM: 286.2
Samples: 4

Max nTPM: 406.9
Min nTPM: 171.2
Sample A Female 406.9
Sample B Female 248.3
Sample C Male 318.2
Sample D Male 171.2
Midbrain
nTPM: 325.3
Samples: 4

Max nTPM: 346.5
Min nTPM: 294.1
Sample A Female 331.3
Sample B Female 294.1
Sample C Male 346.5
Sample D Male 329.2
Periaqueductal gray
nTPM: 276.3
Samples: 3

Max nTPM: 321.5
Min nTPM: 252.5
Sample B Female 252.5
Sample C Male 321.5
Sample D Male 254.8
Superior colliculi
nTPM: 331.1
Samples: 4

Max nTPM: 373.7
Min nTPM: 274.4
Sample A Female 373.7
Sample B Female 274.4
Sample C Male 360.7
Sample D Male 315.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 461.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 461.7
Samples: 4

Max nTPM: 474.3
Min nTPM: 452.0
Sample A Male 460.2
Sample B Male 474.3
Sample C Female 452.0
Sample D Female 460.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 10.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 10.0
1262 Antisense, RP_040324_01_F06, Mouse strain C57BL/6J (56 days, male) 10.0
1261 Antisense, RP_040324_01_F06, Mouse strain C57BL/6J (56 days, male) 9.0

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