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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
31.1
nTPM
Monaco:
91.6
nTPM
Schmiedel:
59.5
TPM
T-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max nTPM
31.1
HPA sample
nTPM
gdT-cell nTPM: 24.8
Samples: 6
Max nTPM: 31.5
Min nTPM: 18.2
P10809_1007
18.2
P10809_1022
23.0
P10809_1041
24.4
P10809_1060
31.5
P10809_1077
19.9
P10809_1098
31.5
MAIT T-cell nTPM: 24.1
Samples: 6
Max nTPM: 29.2
Min nTPM: 18.3
P10809_1006
18.3
P10809_1024
24.2
P10809_1043
24.1
P10809_1062
26.7
P10809_1083
29.2
P10809_1097
21.9
Memory CD4 T-cell nTPM: 28.5
Samples: 6
Max nTPM: 34.1
Min nTPM: 21.9
P10809_1014
21.9
P10809_1026
29.5
P10809_1045
34.1
P10809_1064
26.2
P10809_1086
30.7
P10809_1113
28.3
Memory CD8 T-cell nTPM: 28.2
Samples: 5
Max nTPM: 31.9
Min nTPM: 18.2
P10809_1012
18.2
P10809_1027
30.8
P10809_1046
31.3
P10809_1065
31.9
P10809_1111
28.8
Naive CD4 T-cell nTPM: 23.4
Samples: 6
Max nTPM: 26.7
Min nTPM: 14.1
P10809_1015
14.1
P10809_1030
26.4
P10809_1049
26.7
P10809_1068
25.6
P10809_1085
25.2
P10809_1112
22.3
Naive CD8 T-cell nTPM: 22.3
Samples: 6
Max nTPM: 30.4
Min nTPM: 14.2
P10809_1016
14.2
P10809_1031
30.4
P10809_1050
23.2
P10809_1069
24.4
P10809_1087
24.2
P10809_1110
17.2
T-reg nTPM: 31.1
Samples: 6
Max nTPM: 45.0
Min nTPM: 20.3
P10809_1018
21.4
P10809_1037
45.0
P10809_1056
33.1
P10809_1075
20.3
P10809_1094
43.8
P10809_1106
22.8
T-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max nTPM
91.6
Monaco sample
nTPM
Central memory CD8 T-cell nTPM: 54.4
Samples: 4
Max nTPM: 76.4
Min nTPM: 45.6
RHH5202_R3573
76.4
RHH5230_R3602
48.8
RHH5259_R3631
45.6
RHH5288_R3660
46.8
Effector memory CD8 T-cell nTPM: 91.7
Samples: 4
Max nTPM: 159.6
Min nTPM: 60.2
RHH5203_R3574
159.6
RHH5231_R3603
69.8
RHH5260_R3632
60.2
RHH5289_R3661
77.0
MAIT T-cell nTPM: 58.8
Samples: 4
Max nTPM: 107.6
Min nTPM: 35.3
RHH5233_R3605
41.5
RHH5205_R3576
107.6
RHH5262_R3634
50.6
RHH5297_R3663
35.3
Memory CD4 T-cell TFH nTPM: 46.0
Samples: 4
Max nTPM: 59.1
Min nTPM: 34.9
RHH5300_R3666
36.2
RHH5236_R3608
59.1
RHH5265_R3637
53.7
RHH5208_R3579
34.9
Memory CD4 T-cell Th1 nTPM: 42.0
Samples: 4
Max nTPM: 56.9
Min nTPM: 17.3
RHH5210_R3581
50.4
RHH5302_R3668
43.3
RHH5238_R3610
17.3
RHH5267_R3639
56.9
Memory CD4 T-cell Th1/Th17 nTPM: 49.9
Samples: 4
Max nTPM: 63.8
Min nTPM: 38.6
RHH5303_R3669
58.1
RHH5211_R3582
63.8
RHH5239_R3611
38.6
RHH5268_R3640
39.0
Memory CD4 T-cell Th17 nTPM: 48.3
Samples: 4
Max nTPM: 51.7
Min nTPM: 44.4
RHH5304_R3670
46.6
RHH5212_R3583
51.7
RHH5240_R3612
50.5
RHH5269_R3641
44.4
Memory CD4 T-cell Th2 nTPM: 60.1
Samples: 4
Max nTPM: 80.7
Min nTPM: 43.6
RHH5305_R3671
48.1
RHH5213_R3584
80.7
RHH5241_R3613
43.6
RHH5270_R3642
68.0
Naive CD4 T-cell nTPM: 28.9
Samples: 4
Max nTPM: 40.3
Min nTPM: 17.9
RHH5306_R3672
27.0
RHH5214_R3585
30.2
RHH5242_R3614
17.9
RHH5271_R3643
40.3
Naive CD8 T-cell nTPM: 33.4
Samples: 4
Max nTPM: 39.9
Min nTPM: 20.4
RHH5201_R3572
37.1
RHH5229_R3601
20.4
RHH5258_R3630
39.9
RHH5287_R3659
36.1
Non-Vd2 gdTCR nTPM: 71.1
Samples: 4
Max nTPM: 112.0
Min nTPM: 50.6
RHH5235_R3607
62.9
RHH5264_R3636
58.8
RHH5207_R3578
112.0
RHH5299_R3665
50.6
T-reg nTPM: 49.6
Samples: 4
Max nTPM: 59.2
Min nTPM: 39.0
RHH5301_R3667
47.5
RHH5237_R3609
59.2
RHH5266_R3638
52.5
RHH5209_R3580
39.0
Terminal effector memory CD4 T-cell nTPM: 59.2
Samples: 2
Max nTPM: 60.1
Min nTPM: 58.2
RHH5243_R3615
60.1
RHH5272_R3644
58.2
Terminal effector memory CD8 T-cell nTPM: 79.9
Samples: 4
Max nTPM: 125.4
Min nTPM: 52.4
RHH5232_R3604
74.9
RHH5204_R3575
125.4
RHH5261_R3633
66.7
RHH5296_R3662
52.4
Vd2 gdTCR nTPM: 72.2
Samples: 4
Max nTPM: 135.9
Min nTPM: 40.9
RHH5234_R3606
65.6
RHH5206_R3577
135.9
RHH5263_R3635
46.4
RHH5298_R3664
40.9
T-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
The Human Protein Atlas project is funded
