MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:48.1 nTPM
HPA Brain:27.6 nTPM
GTEx:48.1 nTPM
FANTOM5:12.9 Scaled Tags Per Million
Pig:47.2 nTPM
Mouse:90.2 nTPM
Allen mouse:10.4 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 27.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 27.6
2586 Male, age 75, left hemisphere 39.9
2666 Male, age 74, left hemisphere 33.0
2219 Male, age 76, both hemispheres 28.5
2019 Male, age 18, unknown 27.7
2828 Female, age 72, unknown 26.9
1827 Male, age 72, unknown 25.3
1833 Male, age 53, unknown 25.0
1830 Male, age 51, unknown 24.2
2411 Female, age 72, unknown 24.2
1870 Female, age 42, unknown 21.7
Dorsal raphe nucleus
nTPM: 21.3
2750 Male, age 76, both hemispheres 22.9
1828 Male, age 53, unknown 22.5
2047 Male, age 72, unknown 20.9
2016 Female, age 72, unknown 20.5
2298 Female, age 72, unknown 19.5
Inferior colliculus
nTPM: 22.8
1890 Male, age 53, unknown 25.5
1848 Female, age 42, unknown 23.3
2097 Female, age 72, unknown 21.6
2849 Male, age 72, unknown 20.8
Median raphe nucleus
nTPM: 19.8
2220 Male, age 76, midline 19.8
Periaquaductal grey, anterior
nTPM: 25.9
1947 Male, age 18, unknown 28.3
2502 Female, age 75, unknown 25.2
1795 Male, age 51, unknown 24.1
Periaquaductal grey, dorsal
nTPM: 20.5
1831 Male, age 72, unknown 24.5
2464 Female, age 72, unknown 22.7
1840 Male, age 53, unknown 17.8
2850 Male, age 76, both hemispheres 17.0
Periaquaductal grey, lateral
nTPM: 20.6
2053 Male, age 18, unknown 22.3
2140 Male, age 76, both hemispheres 22.2
2272 Male, age 74, both hemispheres 17.3
Pretectal area
nTPM: 23.7
2407 Male, age 75, both hemispheres 30.0
2007 Male, age 72, unknown 27.9
1817 Female, age 42, unknown 26.1
1944 Female, age 72, unknown 25.3
1816 Male, age 51, unknown 25.1
1815 Male, age 53, unknown 23.9
2316 Male, age 76, right hemisphere 22.9
2667 Female, age 75, unknown 22.0
2825 Male, age 18, unknown 20.3
2224 Female, age 72, unknown 19.6
2273 Male, age 74, both hemispheres 18.0
Red nucleus
nTPM: 25.6
2584 Male, age 75, left hemisphere 31.3
2588 Male, age 74, left hemisphere 29.3
2785 Male, age 18, unknown 28.4
1904 Male, age 53, unknown 27.4
2227 Male, age 72, unknown 27.3
1865 Male, age 51, unknown 27.1
2769 Male, age 72, unknown 27.0
2823 Male, age 76, right hemisphere 25.1
1821 Female, age 72, unknown 21.8
2503 Female, age 72, unknown 21.3
1954 Female, age 42, unknown 21.1
2725 Female, age 75, unknown 19.8
Substantia nigra
nTPM: 21.9
2583 Male, age 75, right hemisphere 29.6
2665 Male, age 74, both hemispheres 29.0
2590 Female, age 75, unknown 22.4
1851 Male, age 51, unknown 21.9
1889 Female, age 72, unknown 21.9
1916 Female, age 42, unknown 21.4
1941 Male, age 53, unknown 20.8
2699 Male, age 18, unknown 20.4
2241 Male, age 72, unknown 16.8
2409 Female, age 72, unknown 14.3
Superior colliculus
nTPM: 26.8
2664 Male, age 75, both hemispheres 40.7
2668 Female, age 75, unknown 35.0
1913 Female, age 42, unknown 25.4
1839 Male, age 51, unknown 24.7
2087 Female, age 72, unknown 24.3
1995 Male, age 72, unknown 24.2
2587 Male, age 74, left hemisphere 23.9
1796 Male, age 53, unknown 23.4
2261 Male, age 18, unknown 23.4
1895 Male, age 76, right hemisphere 22.5
Ventral tegmental area
nTPM: 21.2
2021 Male, age 53, unknown 23.3
1942 Male, age 51, unknown 23.1
1915 Female, age 42, unknown 22.5
2223 Female, age 72, unknown 20.6
2410 Female, age 72, unknown 18.9
2218 Male, age 76, both hemispheres 18.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 48.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 48.1
Samples: 139

Max nTPM: 85.8
Min nTPM: 20.7
Std nTPM: 11.7
Median nTPM: 47.2
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 85.8
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 81.6
GTEX-T6MN-0011-R2A-SM-32QOW 50-59 years, male 80.8
GTEX-11PRG-0011-R2a-SM-69LQ5 50-59 years, male 78.4
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 71.8
GTEX-P44G-0011-R2A-SM-2XCD2 30-39 years, male 68.9
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 68.2
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 67.9
GTEX-147GR-0011-R2b-SM-5S2RQ 60-69 years, male 67.5
GTEX-13G51-0011-R2b-SM-5LZXS 60-69 years, male 67.3
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 65.9
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 12.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 12.9
FF:10158-103A5 76 years, female 12.9

MIDBRAIN - Pig RNA-seqi
Average nTPM 47.2
Pig sample Sample description nTPM
Substantia nigra
nTPM: 46.1
Samples: 4

Max nTPM: 53.6
Min nTPM: 38.3
Sample A Female 53.6
Sample B Female 40.1
Sample C Male 52.2
Sample D Male 38.3
Midbrain
nTPM: 46.1
Samples: 4

Max nTPM: 49.5
Min nTPM: 44.4
Sample A Female 44.4
Sample B Female 45.2
Sample C Male 45.2
Sample D Male 49.5
Periaqueductal gray
nTPM: 41.2
Samples: 3

Max nTPM: 46.6
Min nTPM: 35.3
Sample B Female 41.6
Sample C Male 46.6
Sample D Male 35.3
Superior colliculi
nTPM: 47.2
Samples: 4

Max nTPM: 54.6
Min nTPM: 37.4
Sample A Female 54.6
Sample B Female 37.4
Sample C Male 43.9
Sample D Male 52.9

MIDBRAIN - Mouse RNA-seqi
Average nTPM 90.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 90.2
Samples: 4

Max nTPM: 100.2
Min nTPM: 82.8
Sample A Male 100.2
Sample B Male 86.1
Sample C Female 82.8
Sample D Female 91.8

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 10.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 10.4
69080515 Antisense, RP_050324_02_C04, Mouse strain C57BL/6J (56 days, male) 10.4

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org