MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:698.8 nTPM
HPA Brain:812.9 nTPM
GTEx:698.8 nTPM
FANTOM5:1553.0 Scaled Tags Per Million
Pig:90.7 nTPM
Mouse:115.3 nTPM
Allen mouse:1.8 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 812.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 595.5
2411 Female, age 72, unknown 864.8
1830 Male, age 51, unknown 820.0
1870 Female, age 42, unknown 780.1
1833 Male, age 53, unknown 715.2
2019 Male, age 18, unknown 661.9
2828 Female, age 72, unknown 540.5
2666 Male, age 74, left hemisphere 436.8
1827 Male, age 72, unknown 434.3
2219 Male, age 76, both hemispheres 356.9
2586 Male, age 75, left hemisphere 344.2
Dorsal raphe nucleus
nTPM: 466.5
2750 Male, age 76, both hemispheres 905.9
2016 Female, age 72, unknown 454.3
1828 Male, age 53, unknown 407.3
2298 Female, age 72, unknown 297.1
2047 Male, age 72, unknown 268.0
Inferior colliculus
nTPM: 372.7
1848 Female, age 42, unknown 409.8
1890 Male, age 53, unknown 373.6
2849 Male, age 72, unknown 356.6
2097 Female, age 72, unknown 350.7
Median raphe nucleus
nTPM: 414.8
2220 Male, age 76, midline 414.8
Periaquaductal grey, anterior
nTPM: 351.2
1947 Male, age 18, unknown 410.3
2502 Female, age 75, unknown 399.6
1795 Male, age 51, unknown 243.8
Periaquaductal grey, dorsal
nTPM: 287.3
2464 Female, age 72, unknown 431.0
1831 Male, age 72, unknown 322.0
1840 Male, age 53, unknown 203.3
2850 Male, age 76, both hemispheres 192.9
Periaquaductal grey, lateral
nTPM: 298.3
2053 Male, age 18, unknown 354.4
2272 Male, age 74, both hemispheres 353.2
2140 Male, age 76, both hemispheres 187.3
Pretectal area
nTPM: 369.1
2316 Male, age 76, right hemisphere 556.4
1815 Male, age 53, unknown 524.1
2825 Male, age 18, unknown 409.8
1817 Female, age 42, unknown 408.9
2407 Male, age 75, both hemispheres 380.6
2007 Male, age 72, unknown 378.5
2273 Male, age 74, both hemispheres 376.5
2224 Female, age 72, unknown 327.9
2667 Female, age 75, unknown 274.9
1944 Female, age 72, unknown 221.2
1816 Male, age 51, unknown 201.3
Red nucleus
nTPM: 812.9
1865 Male, age 51, unknown 1104.4
1821 Female, age 72, unknown 1099.7
1904 Male, age 53, unknown 991.5
2823 Male, age 76, right hemisphere 891.3
2769 Male, age 72, unknown 825.0
1954 Female, age 42, unknown 822.3
2227 Male, age 72, unknown 812.4
2503 Female, age 72, unknown 800.7
2785 Male, age 18, unknown 704.5
2588 Male, age 74, left hemisphere 623.7
2725 Female, age 75, unknown 620.4
2584 Male, age 75, left hemisphere 458.3
Substantia nigra
nTPM: 460.4
1851 Male, age 51, unknown 614.4
2409 Female, age 72, unknown 560.5
2590 Female, age 75, unknown 541.3
1889 Female, age 72, unknown 516.3
2241 Male, age 72, unknown 475.9
2699 Male, age 18, unknown 450.6
2583 Male, age 75, right hemisphere 427.6
1916 Female, age 42, unknown 366.9
1941 Male, age 53, unknown 341.3
2665 Male, age 74, both hemispheres 309.6
Superior colliculus
nTPM: 491.7
1913 Female, age 42, unknown 786.3
1995 Male, age 72, unknown 675.0
1895 Male, age 76, right hemisphere 668.6
2587 Male, age 74, left hemisphere 586.4
2668 Female, age 75, unknown 530.8
1839 Male, age 51, unknown 501.4
1796 Male, age 53, unknown 368.3
2664 Male, age 75, both hemispheres 274.7
2087 Female, age 72, unknown 272.8
2261 Male, age 18, unknown 252.8
Ventral tegmental area
nTPM: 544.1
2223 Female, age 72, unknown 785.8
2410 Female, age 72, unknown 708.5
2021 Male, age 53, unknown 501.0
1915 Female, age 42, unknown 448.1
1942 Male, age 51, unknown 423.6
2218 Male, age 76, both hemispheres 397.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 698.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 698.8
Samples: 139

Max nTPM: 2254.6
Min nTPM: 239.8
Std nTPM: 378.8
Median nTPM: 584.6
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 2254.6
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 1852.9
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 1826.5
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 1714.4
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 1627.8
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 1598.1
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 1543.7
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 1438.2
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 1381.0
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 1354.7
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 1322.0
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 1553.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 1553.0
FF:10158-103A5 76 years, female 1553.0

MIDBRAIN - Pig RNA-seqi
Average nTPM 90.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 87.9
Samples: 4

Max nTPM: 104.8
Min nTPM: 70.0
Sample A Female 103.1
Sample B Female 73.7
Sample C Male 70.0
Sample D Male 104.8
Midbrain
nTPM: 90.7
Samples: 4

Max nTPM: 142.3
Min nTPM: 54.0
Sample A Female 142.3
Sample B Female 98.9
Sample C Male 54.0
Sample D Male 67.6
Periaqueductal gray
nTPM: 69.1
Samples: 3

Max nTPM: 79.1
Min nTPM: 54.7
Sample B Female 79.1
Sample C Male 54.7
Sample D Male 73.4
Superior colliculi
nTPM: 82.2
Samples: 4

Max nTPM: 97.5
Min nTPM: 68.3
Sample A Female 97.5
Sample B Female 68.3
Sample C Male 75.7
Sample D Male 87.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 115.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 115.4
Samples: 4

Max nTPM: 120.7
Min nTPM: 111.3
Sample A Male 115.9
Sample B Male 113.5
Sample C Female 111.3
Sample D Female 120.7

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.8
71656904 Antisense, RP_050927_04_E05, Mouse strain C57BL/6J (56 days, male) 1.8

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