MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:7.7 nTPM
HPA Brain:33.4 nTPM
GTEx:7.7 nTPM
FANTOM5:19.3 Scaled Tags Per Million
Pig:23.5 nTPM
Mouse:12.1 nTPM
Allen mouse:0.7 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 33.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 28.6
1833 Male, age 53, unknown 31.7
2411 Female, age 72, unknown 31.1
2019 Male, age 18, unknown 30.9
1827 Male, age 72, unknown 30.1
1870 Female, age 42, unknown 29.9
1830 Male, age 51, unknown 28.9
2666 Male, age 74, left hemisphere 27.6
2828 Female, age 72, unknown 26.7
2219 Male, age 76, both hemispheres 26.4
2586 Male, age 75, left hemisphere 22.6
Dorsal raphe nucleus
nTPM: 30.0
2016 Female, age 72, unknown 39.1
2298 Female, age 72, unknown 30.2
2750 Male, age 76, both hemispheres 29.8
1828 Male, age 53, unknown 29.3
2047 Male, age 72, unknown 21.5
Inferior colliculus
nTPM: 30.1
2097 Female, age 72, unknown 31.6
1890 Male, age 53, unknown 30.7
2849 Male, age 72, unknown 30.2
1848 Female, age 42, unknown 28.0
Median raphe nucleus
nTPM: 23.5
2220 Male, age 76, midline 23.5
Periaquaductal grey, anterior
nTPM: 30.6
2502 Female, age 75, unknown 38.3
1947 Male, age 18, unknown 28.3
1795 Male, age 51, unknown 25.3
Periaquaductal grey, dorsal
nTPM: 33.4
2850 Male, age 76, both hemispheres 35.9
1840 Male, age 53, unknown 35.2
1831 Male, age 72, unknown 31.1
2464 Female, age 72, unknown 31.1
Periaquaductal grey, lateral
nTPM: 30.7
2053 Male, age 18, unknown 32.2
2140 Male, age 76, both hemispheres 30.5
2272 Male, age 74, both hemispheres 29.2
Pretectal area
nTPM: 29.0
2273 Male, age 74, both hemispheres 33.6
2224 Female, age 72, unknown 32.8
2007 Male, age 72, unknown 31.5
1817 Female, age 42, unknown 29.4
2316 Male, age 76, right hemisphere 29.2
1815 Male, age 53, unknown 29.1
2825 Male, age 18, unknown 28.3
1816 Male, age 51, unknown 27.5
2667 Female, age 75, unknown 26.9
1944 Female, age 72, unknown 26.7
2407 Male, age 75, both hemispheres 24.0
Red nucleus
nTPM: 31.6
2503 Female, age 72, unknown 36.4
2588 Male, age 74, left hemisphere 34.4
1865 Male, age 51, unknown 34.0
1821 Female, age 72, unknown 33.1
2785 Male, age 18, unknown 32.5
2227 Male, age 72, unknown 31.3
2769 Male, age 72, unknown 30.8
2725 Female, age 75, unknown 30.7
2823 Male, age 76, right hemisphere 30.5
1904 Male, age 53, unknown 30.3
1954 Female, age 42, unknown 29.7
2584 Male, age 75, left hemisphere 25.7
Substantia nigra
nTPM: 31.1
2409 Female, age 72, unknown 40.8
2699 Male, age 18, unknown 34.6
2241 Male, age 72, unknown 34.5
1851 Male, age 51, unknown 33.0
2665 Male, age 74, both hemispheres 31.9
1889 Female, age 72, unknown 29.8
1916 Female, age 42, unknown 28.7
1941 Male, age 53, unknown 28.6
2590 Female, age 75, unknown 25.6
2583 Male, age 75, right hemisphere 23.7
Superior colliculus
nTPM: 29.8
2587 Male, age 74, left hemisphere 36.3
1895 Male, age 76, right hemisphere 35.8
1995 Male, age 72, unknown 34.0
1913 Female, age 42, unknown 32.8
1839 Male, age 51, unknown 30.7
2668 Female, age 75, unknown 30.6
1796 Male, age 53, unknown 28.5
2087 Female, age 72, unknown 24.6
2261 Male, age 18, unknown 24.1
2664 Male, age 75, both hemispheres 20.5
Ventral tegmental area
nTPM: 29.3
1915 Female, age 42, unknown 30.6
2223 Female, age 72, unknown 30.0
1942 Male, age 51, unknown 29.7
2218 Male, age 76, both hemispheres 29.3
2021 Male, age 53, unknown 28.0
2410 Female, age 72, unknown 28.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 7.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 7.7
Samples: 139

Max nTPM: 17.8
Min nTPM: 2.5
Std nTPM: 2.4
Median nTPM: 7.3
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 17.8
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 17.0
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 15.8
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 13.2
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 12.9
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 12.8
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 12.3
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 12.3
GTEX-1GMR8-0011-R2a-SM-CE6RD 50-59 years, female 12.2
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 11.8
GTEX-18464-0011-R2a-SM-731AL 50-59 years, male 11.7
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 19.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 19.3
FF:10158-103A5 76 years, female 19.3

MIDBRAIN - Pig RNA-seqi
Average nTPM 23.5
Pig sample Sample description nTPM
Substantia nigra
nTPM: 21.4
Samples: 4

Max nTPM: 24.8
Min nTPM: 19.0
Sample A Female 20.8
Sample B Female 20.9
Sample C Male 19.0
Sample D Male 24.8
Midbrain
nTPM: 22.8
Samples: 4

Max nTPM: 25.1
Min nTPM: 20.5
Sample A Female 25.1
Sample B Female 24.9
Sample C Male 20.7
Sample D Male 20.5
Periaqueductal gray
nTPM: 23.5
Samples: 3

Max nTPM: 26.7
Min nTPM: 21.4
Sample B Female 22.4
Sample C Male 21.4
Sample D Male 26.7
Superior colliculi
nTPM: 22.9
Samples: 4

Max nTPM: 25.0
Min nTPM: 21.1
Sample A Female 22.2
Sample B Female 21.1
Sample C Male 23.3
Sample D Male 25.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 12.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 12.1
Samples: 4

Max nTPM: 12.9
Min nTPM: 10.9
Sample A Male 12.5
Sample B Male 12.2
Sample C Female 12.9
Sample D Female 10.9

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.7
73817944 Antisense, RP_051214_01_A07, Mouse strain C57BL/6J (56 days, male) 1.3
77887882 Antisense, RP_070208_04_C11, Mouse strain C57BL/6J (56 days, male) 0.7
633283 Antisense, RP_040907_02_D10, Mouse strain C57BL/6J (56 days, male) 0.1

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