HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Low
Neuronal cells: Medium
RNA expressioni
Consensus:51.3 nTPM
HPA Brain:82.2 nTPM
GTEx:51.3 nTPM
FANTOM5:63.4 Scaled Tags Per Million
Pig:35.6 nTPM
Mouse:88.5 nTPM
Allen mouse:15.5 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA064978Antibody CAB033965
Glial cells Not detectedLow
Neuronal cells MediumMedium





HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 82.2
Sample id Sample description nTPM
Hippocampus
nTPM: 82.2
1898 Male, age 80, left hemisphere 94.7
2529 Female, age 94, left hemisphere 89.4
2148 Female, age 91, left hemisphere 81.5
1855 Male, age 76, left hemisphere 79.2
1911 Female, age 85, right hemisphere 76.9
2621 Female, age 67, right hemisphere 71.6
Dentate gyrus
nTPM: 81.5
2528 Male, age 74, both hemispheres 99.9
2530 Female, age 94, left hemisphere 95.4
2010 Male, age 76, both hemispheres 89.4
1927 Female, age 91, both hemispheres 74.2
2246 Female, age 85, both hemispheres 69.7
2531 Female, age 67, both hemispheres 60.6
Entorhinal gyrus
nTPM: 72.4
2117 Female, age 91, right hemisphere 89.3
1787 Male, age 76, left hemisphere 80.8
1938 Female, age 85, left hemisphere 77.0
2764 Male, age 80, right hemisphere 72.8
2613 Female, age 94, left hemisphere 60.8
2686 Male, age 75, right hemisphere 54.0
Hippocampus, CA1
nTPM: 78.5
2749 Male, age 80, left hemisphere 87.7
2527 Male, age 74, both hemispheres 79.8
1873 Female, age 85, both hemispheres 78.6
2045 Male, age 76, both hemispheres 73.8
2082 Female, age 91, right hemisphere 72.5
Hippocampus, CA2
nTPM: 81.9
2249 Male, age 74, both hemispheres 94.2
1963 Male, age 80, left hemisphere 90.0
1940 Female, age 85, left hemisphere 83.9
2113 Female, age 91, right hemisphere 79.3
1892 Male, age 76, both hemispheres 73.1
2437 Female, age 94, left hemisphere 71.0
Hippocampus, CA3
nTPM: 75.8
2436 Male, age 74, both hemispheres 84.5
1891 Female, age 85, both hemispheres 80.0
1867 Male, age 76, both hemispheres 76.7
2620 Female, age 94, left hemisphere 76.6
2861 Female, age 67, both hemispheres 69.2
2137 Male, age 80, left hemisphere 68.1
Parahippocampal cortex
nTPM: 70.0
2018 Male, age 76, both hemispheres 78.6
2250 Female, age 67, right hemisphere 78.6
1850 Male, age 80, both hemispheres 77.2
1990 Female, age 91, right hemisphere 76.6
1933 Female, age 85, both hemispheres 74.5
2245 Female, age 91, both hemispheres 71.0
2692 Male, age 74, both hemispheres 65.6
2532 Female, age 72, left hemisphere 64.7
2693 Female, age 94, both hemispheres 57.6
2622 Female, age 67, right hemisphere 56.2
Perirhinal gyrus
nTPM: 74.3
1794 Male, age 80, right hemisphere 82.9
1847 Female, age 91, left hemisphere 77.7
1841 Female, age 85, right hemisphere 77.4
2848 Male, age 76, right hemisphere 68.3
2521 Female, age 94, right hemisphere 65.4
Subiculum
nTPM: 75.1
2729 Female, age 91, right hemisphere 91.1
1977 Female, age 85, both hemispheres 78.3
1901 Male, age 80, both hemispheres 74.8
2042 Male, age 76, both hemispheres 74.5
2619 Male, age 74, both hemispheres 70.6
2438 Female, age 94, left hemisphere 61.6

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 51.3
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 51.3
Samples: 197

Max nTPM: 91.8
Min nTPM: 21.5
Std nTPM: 11.4
Median nTPM: 50.7
GTEX-13NZ8-0011-R1b-SM-5KM3V 60-69 years, female 91.8
GTEX-QVUS-0011-R1A-SM-3GAD2 60-69 years, female 84.4
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 82.5
GTEX-145MH-0011-R1b-SM-5PNWY 50-59 years, male 80.6
GTEX-1IY9M-0011-R1a-SM-EXURZ 60-69 years, male 79.4
GTEX-144GO-0011-R1a-SM-5PNWO 60-69 years, male 78.2
GTEX-R55E-0011-R1A-SM-2TC6N 20-29 years, male 75.2
GTEX-RNOR-0011-R1A-SM-CNNP5 50-59 years, female 74.5
GTEX-X4XX-0011-R1B-SM-3P622 60-69 years, male 71.6
GTEX-1GMR8-0011-R1b-SM-CJI2O 50-59 years, female 70.6
GTEX-PWO3-0011-R1A-SM-2I5EW 60-69 years, female 70.4
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 63.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 63.4
FF:10153-102I9 76 years, female 73.8
FF:10169-103B7 60 years, female 52.9

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 35.6
Pig sample Sample description nTPM
Subiculum
nTPM: 29.7
Samples: 4

Max nTPM: 34.7
Min nTPM: 26.4
Sample A Female 34.7
Sample B Female 27.2
Sample C Male 30.3
Sample D Male 26.4
Dorsal hippocampus
nTPM: 35.6
Samples: 4

Max nTPM: 43.7
Min nTPM: 29.8
Sample A Female 43.7
Sample B Female 38.7
Sample C Male 30.3
Sample D Male 29.8
Entorhinal cortex
nTPM: 28.6
Samples: 4

Max nTPM: 31.0
Min nTPM: 26.1
Sample A Female 29.1
Sample B Female 28.0
Sample C Male 31.0
Sample D Male 26.1
Ventral hippocampus
nTPM: 34.4
Samples: 4

Max nTPM: 42.2
Min nTPM: 25.3
Sample A Female 31.5
Sample B Female 25.3
Sample C Male 38.4
Sample D Male 42.2

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 88.5
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 82.1
Samples: 4

Max nTPM: 92.0
Min nTPM: 73.8
Sample A Male 73.8
Sample B Male 80.7
Sample C Female 82.0
Sample D Female 92.0
Hippocampal formation
nTPM: 88.5
Samples: 4

Max nTPM: 94.3
Min nTPM: 82.1
Sample A Male 94.3
Sample B Male 88.3
Sample C Female 89.1
Sample D Female 82.1

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 15.5
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 15.5
74800953 Antisense, RP_060315_02_A10, Mouse strain C57BL/6J (56 days, male) 17.9
68193038 Antisense, RP_040825_01_H05, Mouse strain C57BL/6J (56 days, male) 13.1

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