MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:56.5 nTPM
HPA Brain:95.5 nTPM
GTEx:56.5 nTPM
FANTOM5:111.6 Scaled Tags Per Million
Pig:32.7 nTPM
Mouse:69.0 nTPM
Allen mouse:11.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 95.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 91.9
2586 Male, age 75, left hemisphere 104.2
2019 Male, age 18, unknown 102.5
2828 Female, age 72, unknown 99.1
2666 Male, age 74, left hemisphere 98.4
1870 Female, age 42, unknown 92.9
2411 Female, age 72, unknown 90.4
1827 Male, age 72, unknown 89.0
1833 Male, age 53, unknown 87.4
1830 Male, age 51, unknown 81.8
2219 Male, age 76, both hemispheres 73.3
Dorsal raphe nucleus
nTPM: 93.7
2016 Female, age 72, unknown 102.8
1828 Male, age 53, unknown 102.4
2298 Female, age 72, unknown 99.3
2047 Male, age 72, unknown 85.9
2750 Male, age 76, both hemispheres 77.9
Inferior colliculus
nTPM: 89.4
2097 Female, age 72, unknown 95.8
1848 Female, age 42, unknown 95.2
1890 Male, age 53, unknown 86.6
2849 Male, age 72, unknown 79.8
Median raphe nucleus
nTPM: 76.0
2220 Male, age 76, midline 76.0
Periaquaductal grey, anterior
nTPM: 89.0
2502 Female, age 75, unknown 93.6
1795 Male, age 51, unknown 89.6
1947 Male, age 18, unknown 83.8
Periaquaductal grey, dorsal
nTPM: 88.6
1840 Male, age 53, unknown 98.2
1831 Male, age 72, unknown 88.9
2464 Female, age 72, unknown 85.6
2850 Male, age 76, both hemispheres 81.8
Periaquaductal grey, lateral
nTPM: 84.9
2053 Male, age 18, unknown 89.6
2272 Male, age 74, both hemispheres 83.1
2140 Male, age 76, both hemispheres 82.0
Pretectal area
nTPM: 95.4
1816 Male, age 51, unknown 104.5
1817 Female, age 42, unknown 102.8
1815 Male, age 53, unknown 99.1
2007 Male, age 72, unknown 98.7
2273 Male, age 74, both hemispheres 98.6
1944 Female, age 72, unknown 96.4
2224 Female, age 72, unknown 95.4
2667 Female, age 75, unknown 93.9
2407 Male, age 75, both hemispheres 86.8
2316 Male, age 76, right hemisphere 86.5
2825 Male, age 18, unknown 86.5
Red nucleus
nTPM: 94.1
1821 Female, age 72, unknown 113.3
2503 Female, age 72, unknown 112.0
2725 Female, age 75, unknown 100.7
2785 Male, age 18, unknown 97.1
1904 Male, age 53, unknown 95.7
2588 Male, age 74, left hemisphere 94.8
2769 Male, age 72, unknown 93.0
1954 Female, age 42, unknown 92.0
2227 Male, age 72, unknown 91.4
1865 Male, age 51, unknown 88.3
2823 Male, age 76, right hemisphere 76.7
2584 Male, age 75, left hemisphere 74.4
Substantia nigra
nTPM: 95.5
1916 Female, age 42, unknown 107.8
1851 Male, age 51, unknown 105.2
2241 Male, age 72, unknown 103.8
2409 Female, age 72, unknown 102.2
1889 Female, age 72, unknown 100.8
2583 Male, age 75, right hemisphere 93.9
2699 Male, age 18, unknown 90.8
2590 Female, age 75, unknown 87.8
2665 Male, age 74, both hemispheres 82.3
1941 Male, age 53, unknown 80.4
Superior colliculus
nTPM: 95.0
1995 Male, age 72, unknown 106.3
2587 Male, age 74, left hemisphere 98.7
1913 Female, age 42, unknown 98.5
1839 Male, age 51, unknown 96.7
2087 Female, age 72, unknown 96.5
2664 Male, age 75, both hemispheres 95.3
2261 Male, age 18, unknown 94.1
1796 Male, age 53, unknown 92.1
2668 Female, age 75, unknown 91.6
1895 Male, age 76, right hemisphere 80.2
Ventral tegmental area
nTPM: 89.9
2410 Female, age 72, unknown 101.9
1915 Female, age 42, unknown 101.5
2021 Male, age 53, unknown 90.0
1942 Male, age 51, unknown 84.6
2223 Female, age 72, unknown 84.3
2218 Male, age 76, both hemispheres 76.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 56.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 56.5
Samples: 139

Max nTPM: 95.5
Min nTPM: 10.1
Std nTPM: 13.4
Median nTPM: 56.7
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 95.5
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 90.3
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 89.3
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 86.6
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 86.1
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 82.9
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 80.9
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 79.1
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 78.7
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 78.7
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 75.8
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 111.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 111.6
FF:10158-103A5 76 years, female 111.6

MIDBRAIN - Pig RNA-seqi
Average nTPM 32.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 30.2
Samples: 4

Max nTPM: 35.2
Min nTPM: 25.4
Sample A Female 35.2
Sample B Female 25.4
Sample C Male 32.3
Sample D Male 27.9
Midbrain
nTPM: 32.7
Samples: 4

Max nTPM: 39.9
Min nTPM: 29.2
Sample A Female 31.9
Sample B Female 29.2
Sample C Male 39.9
Sample D Male 29.9
Periaqueductal gray
nTPM: 28.7
Samples: 3

Max nTPM: 31.1
Min nTPM: 26.1
Sample B Female 28.8
Sample C Male 31.1
Sample D Male 26.1
Superior colliculi
nTPM: 32.5
Samples: 4

Max nTPM: 36.7
Min nTPM: 26.0
Sample A Female 33.8
Sample B Female 26.0
Sample C Male 36.7
Sample D Male 33.3

MIDBRAIN - Mouse RNA-seqi
Average nTPM 69.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 69.0
Samples: 4

Max nTPM: 71.6
Min nTPM: 66.3
Sample A Male 68.5
Sample B Male 69.5
Sample C Female 66.3
Sample D Female 71.6

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 11.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 11.2
74800953 Antisense, RP_060315_02_A10, Mouse strain C57BL/6J (56 days, male) 14.7
68193038 Antisense, RP_040825_01_H05, Mouse strain C57BL/6J (56 days, male) 7.7

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org