MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:37.6 nTPM
HPA Brain:40.8 nTPM
GTEx:37.6 nTPM
FANTOM5:78.9 Scaled Tags Per Million
Pig:27.8 nTPM
Mouse:39.3 nTPM
Allen mouse:7.3 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 40.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 40.6
2586 Male, age 75, left hemisphere 48.8
2828 Female, age 72, unknown 42.9
2666 Male, age 74, left hemisphere 42.8
1870 Female, age 42, unknown 40.4
1833 Male, age 53, unknown 39.6
1827 Male, age 72, unknown 39.5
2019 Male, age 18, unknown 38.8
1830 Male, age 51, unknown 38.7
2219 Male, age 76, both hemispheres 37.7
2411 Female, age 72, unknown 36.8
Dorsal raphe nucleus
nTPM: 35.8
2016 Female, age 72, unknown 38.1
2047 Male, age 72, unknown 37.8
1828 Male, age 53, unknown 35.7
2750 Male, age 76, both hemispheres 33.8
2298 Female, age 72, unknown 33.4
Inferior colliculus
nTPM: 34.8
2849 Male, age 72, unknown 39.7
1848 Female, age 42, unknown 36.8
1890 Male, age 53, unknown 32.7
2097 Female, age 72, unknown 30.1
Median raphe nucleus
nTPM: 36.6
2220 Male, age 76, midline 36.6
Periaquaductal grey, anterior
nTPM: 36.7
1795 Male, age 51, unknown 39.7
1947 Male, age 18, unknown 37.4
2502 Female, age 75, unknown 32.9
Periaquaductal grey, dorsal
nTPM: 37.1
2850 Male, age 76, both hemispheres 40.8
1831 Male, age 72, unknown 37.9
2464 Female, age 72, unknown 35.2
1840 Male, age 53, unknown 34.6
Periaquaductal grey, lateral
nTPM: 39.0
2140 Male, age 76, both hemispheres 39.8
2272 Male, age 74, both hemispheres 39.7
2053 Male, age 18, unknown 37.6
Pretectal area
nTPM: 38.2
2407 Male, age 75, both hemispheres 45.5
1815 Male, age 53, unknown 41.5
2825 Male, age 18, unknown 39.6
1816 Male, age 51, unknown 38.2
1944 Female, age 72, unknown 38.0
2273 Male, age 74, both hemispheres 37.4
1817 Female, age 42, unknown 36.8
2667 Female, age 75, unknown 36.8
2007 Male, age 72, unknown 36.1
2316 Male, age 76, right hemisphere 35.5
2224 Female, age 72, unknown 34.8
Red nucleus
nTPM: 40.8
2588 Male, age 74, left hemisphere 46.0
2584 Male, age 75, left hemisphere 43.0
1865 Male, age 51, unknown 42.9
2769 Male, age 72, unknown 42.9
1904 Male, age 53, unknown 42.1
2227 Male, age 72, unknown 40.6
2725 Female, age 75, unknown 40.2
2823 Male, age 76, right hemisphere 39.7
2503 Female, age 72, unknown 39.6
2785 Male, age 18, unknown 38.8
1954 Female, age 42, unknown 37.1
1821 Female, age 72, unknown 36.0
Substantia nigra
nTPM: 36.4
2590 Female, age 75, unknown 42.3
2583 Male, age 75, right hemisphere 40.9
2665 Male, age 74, both hemispheres 40.6
2699 Male, age 18, unknown 40.4
1851 Male, age 51, unknown 36.6
1941 Male, age 53, unknown 36.0
1889 Female, age 72, unknown 35.4
1916 Female, age 42, unknown 32.8
2409 Female, age 72, unknown 30.6
2241 Male, age 72, unknown 28.8
Superior colliculus
nTPM: 37.2
2664 Male, age 75, both hemispheres 44.4
1913 Female, age 42, unknown 41.6
1995 Male, age 72, unknown 38.4
1796 Male, age 53, unknown 37.1
2668 Female, age 75, unknown 36.9
2587 Male, age 74, left hemisphere 35.8
2261 Male, age 18, unknown 35.4
2087 Female, age 72, unknown 34.7
1839 Male, age 51, unknown 34.4
1895 Male, age 76, right hemisphere 33.5
Ventral tegmental area
nTPM: 35.2
2223 Female, age 72, unknown 37.6
2021 Male, age 53, unknown 36.3
1915 Female, age 42, unknown 34.8
2218 Male, age 76, both hemispheres 34.3
2410 Female, age 72, unknown 34.1
1942 Male, age 51, unknown 34.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 37.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 37.6
Samples: 139

Max nTPM: 69.1
Min nTPM: 21.9
Std nTPM: 8.5
Median nTPM: 36.5
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 69.1
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 64.5
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 62.3
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 61.8
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 60.7
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 56.4
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 54.9
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 52.4
GTEX-13N2G-0011-R2a-SM-5MR4Q 60-69 years, male 52.2
GTEX-13QJC-0011-R2b-SM-5PNUN 60-69 years, female 51.2
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 50.1
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 78.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 78.9
FF:10158-103A5 76 years, female 78.9

MIDBRAIN - Pig RNA-seqi
Average nTPM 27.8
Pig sample Sample description nTPM
Substantia nigra
nTPM: 27.8
Samples: 4

Max nTPM: 32.2
Min nTPM: 24.9
Sample A Female 24.9
Sample B Female 27.0
Sample C Male 27.2
Sample D Male 32.2
Midbrain
nTPM: 27.1
Samples: 4

Max nTPM: 34.6
Min nTPM: 24.3
Sample A Female 34.6
Sample B Female 24.8
Sample C Male 24.3
Sample D Male 24.5
Periaqueductal gray
nTPM: 26.7
Samples: 3

Max nTPM: 28.2
Min nTPM: 25.3
Sample B Female 25.3
Sample C Male 28.2
Sample D Male 26.6
Superior colliculi
nTPM: 26.3
Samples: 4

Max nTPM: 27.4
Min nTPM: 25.1
Sample A Female 26.0
Sample B Female 26.7
Sample C Male 25.1
Sample D Male 27.4

MIDBRAIN - Mouse RNA-seqi
Average nTPM 39.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 39.4
Samples: 4

Max nTPM: 42.0
Min nTPM: 33.8
Sample A Male 33.8
Sample B Male 40.0
Sample C Female 41.6
Sample D Female 42.0

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 7.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 7.3
69169660 Antisense, RP_050321_04_A04, Mouse strain C57BL/6J (56 days, male) 7.3

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