MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:61.3 nTPM
HPA Brain:29.1 nTPM
GTEx:61.3 nTPM
FANTOM5:154.2 Scaled Tags Per Million
Pig:87.7 nTPM
Mouse:85.0 nTPM
Allen mouse:4.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 29.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 24.7
2411 Female, age 72, unknown 29.2
2019 Male, age 18, unknown 28.1
1870 Female, age 42, unknown 27.4
1827 Male, age 72, unknown 27.1
1833 Male, age 53, unknown 25.9
1830 Male, age 51, unknown 25.1
2828 Female, age 72, unknown 22.0
2219 Male, age 76, both hemispheres 21.8
2666 Male, age 74, left hemisphere 21.0
2586 Male, age 75, left hemisphere 19.6
Dorsal raphe nucleus
nTPM: 26.7
2298 Female, age 72, unknown 28.7
2750 Male, age 76, both hemispheres 27.1
1828 Male, age 53, unknown 26.2
2047 Male, age 72, unknown 26.1
2016 Female, age 72, unknown 25.2
Inferior colliculus
nTPM: 25.2
2097 Female, age 72, unknown 28.7
1890 Male, age 53, unknown 26.4
1848 Female, age 42, unknown 23.4
2849 Male, age 72, unknown 22.2
Median raphe nucleus
nTPM: 25.7
2220 Male, age 76, midline 25.7
Periaquaductal grey, anterior
nTPM: 24.3
1947 Male, age 18, unknown 26.4
2502 Female, age 75, unknown 24.8
1795 Male, age 51, unknown 21.6
Periaquaductal grey, dorsal
nTPM: 22.4
2850 Male, age 76, both hemispheres 23.1
1840 Male, age 53, unknown 22.6
2464 Female, age 72, unknown 22.0
1831 Male, age 72, unknown 21.8
Periaquaductal grey, lateral
nTPM: 24.5
2272 Male, age 74, both hemispheres 30.3
2053 Male, age 18, unknown 24.1
2140 Male, age 76, both hemispheres 19.0
Pretectal area
nTPM: 26.3
1944 Female, age 72, unknown 31.2
2007 Male, age 72, unknown 30.0
1817 Female, age 42, unknown 29.7
2667 Female, age 75, unknown 28.5
1816 Male, age 51, unknown 28.4
1815 Male, age 53, unknown 27.7
2273 Male, age 74, both hemispheres 27.4
2224 Female, age 72, unknown 26.3
2316 Male, age 76, right hemisphere 21.1
2825 Male, age 18, unknown 20.2
2407 Male, age 75, both hemispheres 19.2
Red nucleus
nTPM: 27.0
1821 Female, age 72, unknown 36.3
2725 Female, age 75, unknown 31.0
1865 Male, age 51, unknown 29.3
1904 Male, age 53, unknown 29.0
1954 Female, age 42, unknown 27.5
2823 Male, age 76, right hemisphere 27.3
2785 Male, age 18, unknown 26.3
2503 Female, age 72, unknown 25.5
2227 Male, age 72, unknown 25.2
2769 Male, age 72, unknown 24.6
2588 Male, age 74, left hemisphere 21.6
2584 Male, age 75, left hemisphere 20.8
Substantia nigra
nTPM: 29.1
2409 Female, age 72, unknown 41.3
1916 Female, age 42, unknown 34.9
2241 Male, age 72, unknown 32.8
1851 Male, age 51, unknown 31.1
1889 Female, age 72, unknown 29.5
1941 Male, age 53, unknown 29.0
2699 Male, age 18, unknown 27.4
2665 Male, age 74, both hemispheres 24.7
2590 Female, age 75, unknown 21.1
2583 Male, age 75, right hemisphere 18.8
Superior colliculus
nTPM: 25.5
2587 Male, age 74, left hemisphere 31.9
1895 Male, age 76, right hemisphere 29.3
2087 Female, age 72, unknown 27.1
2261 Male, age 18, unknown 27.1
1913 Female, age 42, unknown 26.7
2668 Female, age 75, unknown 26.1
1995 Male, age 72, unknown 23.3
1839 Male, age 51, unknown 22.6
1796 Male, age 53, unknown 22.5
2664 Male, age 75, both hemispheres 18.0
Ventral tegmental area
nTPM: 27.0
2410 Female, age 72, unknown 31.1
2223 Female, age 72, unknown 28.8
1915 Female, age 42, unknown 27.9
2218 Male, age 76, both hemispheres 26.2
1942 Male, age 51, unknown 25.0
2021 Male, age 53, unknown 23.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 61.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 61.3
Samples: 139

Max nTPM: 99.9
Min nTPM: 36.7
Std nTPM: 11.1
Median nTPM: 59.8
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 99.9
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 98.0
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 88.9
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 87.8
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 87.4
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 85.3
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 81.8
GTEX-1F48J-0011-R2a-SM-CL535 50-59 years, female 80.4
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 80.1
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 79.6
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 79.5
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 154.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 154.2
FF:10158-103A5 76 years, female 154.2

MIDBRAIN - Pig RNA-seqi
Average nTPM 87.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 80.7
Samples: 4

Max nTPM: 106.5
Min nTPM: 59.8
Sample A Female 106.5
Sample B Female 85.8
Sample C Male 70.8
Sample D Male 59.8
Midbrain
nTPM: 86.4
Samples: 4

Max nTPM: 106.1
Min nTPM: 66.8
Sample A Female 106.1
Sample B Female 89.7
Sample C Male 83.0
Sample D Male 66.8
Periaqueductal gray
nTPM: 65.9
Samples: 3

Max nTPM: 72.3
Min nTPM: 58.8
Sample B Female 72.3
Sample C Male 66.5
Sample D Male 58.8
Superior colliculi
nTPM: 87.7
Samples: 4

Max nTPM: 93.7
Min nTPM: 75.4
Sample A Female 93.7
Sample B Female 93.1
Sample C Male 88.7
Sample D Male 75.4

MIDBRAIN - Mouse RNA-seqi
Average nTPM 85.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 85.0
Samples: 4

Max nTPM: 88.6
Min nTPM: 81.0
Sample A Male 87.4
Sample B Male 88.6
Sample C Female 81.0
Sample D Female 83.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 4.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 4.2
70527975 Antisense, RP_050623_01_E09, Mouse strain C57BL/6J (56 days, male) 4.2

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