BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Not detected
Neuronal cells: High
RNA expressioni
Consensus:28.7 nTPM
HPA Brain:27.3 nTPM
GTEx:28.7 nTPM
FANTOM5:42.3 Scaled Tags Per Million
Pig:51.1 nTPM
Mouse:54.5 nTPM
Allen mouse:0.6 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA040918
Glial cells Not detected
Neuronal cells High



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 27.3
Sample id Sample description nTPM
Caudate nucleus
nTPM: 24.7
2481 Female, age 94, left hemisphere 28.3
2288 Male, age 75, left hemisphere 26.6
1781 Male, age 74, unknown 25.4
2846 Female, age 79, unknown 24.7
1857 Female, age 85, left hemisphere 23.9
2289 Male, age 61, right hemisphere 23.8
2290 Female, age 72, unknown 23.5
1854 Male, age 80, left hemisphere 21.7
Globus pallidus, externus
nTPM: 27.3
1996 Male, age 80, right hemisphere 31.8
2646 Male, age 61, right hemisphere 29.9
2772 Female, age 79, unknown 28.7
2567 Female, age 72, unknown 25.8
2395 Male, age 75, both hemispheres 20.2
Globus pallidus, internus
nTPM: 25.7
2483 Female, age 94, right hemisphere 30.8
2287 Male, age 75, right hemisphere 28.3
1818 Male, age 74, unknown 27.1
2037 Male, age 80, right hemisphere 26.2
2566 Female, age 72, unknown 23.6
2778 Female, age 91, both hemispheres 23.2
2111 Female, age 85, right hemisphere 21.0
Nucleus accumbens
nTPM: 22.8
2286 Male, age 75, left hemisphere 26.5
1783 Male, age 74, unknown 25.3
1806 Female, age 85, left hemisphere 23.5
2698 Female, age 72, unknown 23.0
2391 Female, age 94, left hemisphere 22.1
1856 Female, age 91, right hemisphere 21.5
2732 Male, age 80, right hemisphere 20.5
2824 Male, age 61, right hemisphere 20.3
Nucleus basalis of Meynert
nTPM: 24.8
2569 Male, age 61, both hemispheres 38.6
2484 Female, age 94, left hemisphere 21.1
2393 Male, age 80, right hemisphere 20.1
2821 Male, age 75, both hemispheres 19.4
Nucleus of the diagonal band
nTPM: 23.3
2775 Male, age 80, right hemisphere 25.9
2195 Female, age 85, both hemispheres 23.9
2029 Male, age 61, right hemisphere 23.2
1812 Female, age 91, both hemispheres 22.8
1979 Male, age 74, unknown 20.6
Putamen
nTPM: 22.5
2482 Female, age 94, left hemisphere 26.4
2466 Female, age 79, unknown 22.8
2489 Female, age 72, unknown 22.2
1829 Male, age 74, unknown 21.8
1937 Female, age 91, right hemisphere 21.8
2647 Male, age 75, left hemisphere 21.8
1838 Male, age 80, right hemisphere 20.3
Septal nuclei
nTPM: 22.5
1960 Male, age 74, unknown 26.6
2031 Female, age 72, unknown 24.1
2009 Female, age 91, both hemispheres 22.7
2199 Male, age 80, right hemisphere 22.7
2059 Female, age 85, both hemispheres 22.0
2629 Female, age 94, right hemisphere 20.0
2394 Male, age 61, left hemisphere 19.4
Stria terminalis, bed nucleus
nTPM: 21.4
1974 Female, age 91, both hemispheres 23.9
2486 Female, age 94, both hemispheres 20.3
2201 Male, age 74, unknown 20.1

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 28.7
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 27.1
Samples: 246

Max nTPM: 62.4
Min nTPM: 10.3
Std nTPM: 6.8
Median nTPM: 26.1
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 62.4
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 54.3
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 47.6
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 46.7
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 44.2
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 43.9
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 42.6
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 41.9
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 40.9
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 40.9
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 40.9
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 24.8
Samples: 246

Max nTPM: 45.8
Min nTPM: 13.6
Std nTPM: 5.4
Median nTPM: 24.5
GTEX-13JVG-0011-R6a-SM-5MR3E 60-69 years, male 45.8
GTEX-12584-0011-R6a-SM-5NQ7C 40-49 years, male 43.7
GTEX-147F4-0011-R6b-SM-5S2UP 50-59 years, male 42.7
GTEX-16Z82-0011-R6a-SM-7IGLV 60-69 years, male 39.0
GTEX-13FLV-0011-R6a-SM-5KLZ4 50-59 years, male 37.6
GTEX-15EO6-0011-R6a-SM-7KULK 50-59 years, male 37.4
GTEX-1RLM8-0011-R6a-SM-EYYXS 50-59 years, male 37.1
GTEX-1GZ2Q-0011-R6a-SM-9OSWM 40-49 years, male 36.8
GTEX-1A8G6-0011-R6b-SM-7P8PE 60-69 years, male 36.6
GTEX-ZVT3-0011-R6a-SM-51MSU 60-69 years, female 35.5
GTEX-1LVAO-0011-R6b-SM-EZ6MX 60-69 years, male 35.0
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Brain - Putamen (basal ganglia)
Average nTPM: 28.7
Samples: 205

Max nTPM: 53.9
Min nTPM: 13.6
Std nTPM: 6.9
Median nTPM: 27.7
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 53.9
GTEX-1F6I4-0011-R7a-SM-CJI24 60-69 years, male 50.4
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 50.1
GTEX-17HG3-0011-R7b-SM-7EPGR 30-39 years, female 48.5
GTEX-17MF6-0011-R7b-SM-7LG6J 40-49 years, male 47.1
GTEX-13OVL-0011-R7a-SM-5P9GW 50-59 years, male 46.9
GTEX-17HII-0011-R7a-SM-79OMS 50-59 years, male 45.0
GTEX-1R46S-0011-R7b-SM-EXUTH 60-69 years, female 43.1
GTEX-13FHP-0011-R7b-SM-5LZYI 50-59 years, male 43.0
GTEX-1HCU6-0011-R7b-SM-ARL77 60-69 years, female 42.4
GTEX-1MA7X-0011-R7b-SM-EYYWS 60-69 years, male 41.7
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 42.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 41.2
FF:10164-103B2 76 years, female 41.2
Nucleus accumbens
Scaled Tags Per Million: 37.2
FF:10037-101F1 23-56 years, mixed 37.2
Putamen
Scaled Tags Per Million: 42.3
FF:10176-103C5 60 years, female 42.3
Globus pallidus
Scaled Tags Per Million: 40.5
FF:10175-103C4 60 years, female 47.8
FF:10161-103A8 76 years, female 33.1

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 51.1
Pig sample Sample description nTPM
Caudate
nTPM: 46.0
Samples: 4

Max nTPM: 54.4
Min nTPM: 39.6
Sample A Female 39.6
Sample B Female 48.2
Sample C Male 54.4
Sample D Male 41.9
Putamen
nTPM: 51.1
Samples: 4

Max nTPM: 67.1
Min nTPM: 42.8
Sample A Female 48.8
Sample B Female 42.8
Sample C Male 67.1
Sample D Male 45.8
Septum
nTPM: 40.2
Samples: 4

Max nTPM: 43.0
Min nTPM: 37.7
Sample A Female 43.0
Sample B Female 41.7
Sample C Male 37.7
Sample D Male 38.5
Ventral pallidum
nTPM: 44.6
Samples: 4

Max nTPM: 51.7
Min nTPM: 39.2
Sample A Female 42.2
Sample B Female 51.7
Sample C Male 45.4
Sample D Male 39.2

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 54.5
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 50.6
Samples: 4

Max nTPM: 52.7
Min nTPM: 47.8
Sample A Male 52.7
Sample B Male 51.2
Sample C Female 50.6
Sample D Female 47.8
Septum
nTPM: 44.2
Samples: 4

Max nTPM: 46.8
Min nTPM: 42.2
Sample A Male 44.9
Sample B Male 42.7
Sample C Female 42.2
Sample D Female 46.8
Ventral forebrain
nTPM: 54.5
Samples: 4

Max nTPM: 58.7
Min nTPM: 50.5
Sample A Male 58.7
Sample B Male 50.5
Sample C Female 53.7
Sample D Female 55.2

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.6
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.6
68523300 Antisense, RP_050118_02_E02, Mouse strain C57BL/6J (56 days, male) 0.6
Pallidum
Expression energy: 0.4
68523300 Antisense, RP_050118_02_E02, Mouse strain C57BL/6J (56 days, male) 0.4

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