MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:22.8 nTPM
HPA Brain:26.0 nTPM
GTEx:22.8 nTPM
FANTOM5:30.3 Scaled Tags Per Million
Pig:46.5 nTPM
Mouse:56.5 nTPM
Allen mouse:0.7 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 26.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 23.8
2586 Male, age 75, left hemisphere 30.1
1827 Male, age 72, unknown 25.9
2828 Female, age 72, unknown 24.9
2019 Male, age 18, unknown 24.2
1870 Female, age 42, unknown 23.2
1833 Male, age 53, unknown 23.1
2219 Male, age 76, both hemispheres 22.3
2666 Male, age 74, left hemisphere 21.7
1830 Male, age 51, unknown 21.5
2411 Female, age 72, unknown 21.2
Dorsal raphe nucleus
nTPM: 23.9
1828 Male, age 53, unknown 26.3
2298 Female, age 72, unknown 25.2
2016 Female, age 72, unknown 24.4
2047 Male, age 72, unknown 22.5
2750 Male, age 76, both hemispheres 21.2
Inferior colliculus
nTPM: 25.2
2097 Female, age 72, unknown 26.7
1890 Male, age 53, unknown 26.0
1848 Female, age 42, unknown 24.4
2849 Male, age 72, unknown 23.8
Median raphe nucleus
nTPM: 21.0
2220 Male, age 76, midline 21.0
Periaquaductal grey, anterior
nTPM: 24.0
1795 Male, age 51, unknown 25.4
1947 Male, age 18, unknown 24.6
2502 Female, age 75, unknown 22.0
Periaquaductal grey, dorsal
nTPM: 23.0
2850 Male, age 76, both hemispheres 25.2
1840 Male, age 53, unknown 24.2
1831 Male, age 72, unknown 21.8
2464 Female, age 72, unknown 20.5
Periaquaductal grey, lateral
nTPM: 25.7
2272 Male, age 74, both hemispheres 29.0
2140 Male, age 76, both hemispheres 24.1
2053 Male, age 18, unknown 24.0
Pretectal area
nTPM: 26.0
2667 Female, age 75, unknown 31.4
2007 Male, age 72, unknown 31.2
1817 Female, age 42, unknown 30.8
1816 Male, age 51, unknown 28.2
2273 Male, age 74, both hemispheres 27.7
1944 Female, age 72, unknown 26.6
2224 Female, age 72, unknown 24.2
1815 Male, age 53, unknown 24.1
2825 Male, age 18, unknown 22.4
2316 Male, age 76, right hemisphere 21.7
2407 Male, age 75, both hemispheres 18.0
Red nucleus
nTPM: 25.3
2725 Female, age 75, unknown 28.1
2503 Female, age 72, unknown 27.9
1904 Male, age 53, unknown 26.6
2227 Male, age 72, unknown 26.6
2769 Male, age 72, unknown 26.4
1954 Female, age 42, unknown 26.1
1821 Female, age 72, unknown 25.9
2823 Male, age 76, right hemisphere 25.2
1865 Male, age 51, unknown 25.1
2785 Male, age 18, unknown 24.5
2588 Male, age 74, left hemisphere 22.0
2584 Male, age 75, left hemisphere 19.3
Substantia nigra
nTPM: 21.5
1889 Female, age 72, unknown 27.3
1916 Female, age 42, unknown 26.1
2699 Male, age 18, unknown 25.0
1851 Male, age 51, unknown 22.1
2583 Male, age 75, right hemisphere 21.9
2665 Male, age 74, both hemispheres 21.4
1941 Male, age 53, unknown 18.9
2409 Female, age 72, unknown 18.7
2590 Female, age 75, unknown 17.6
2241 Male, age 72, unknown 16.0
Superior colliculus
nTPM: 23.1
1796 Male, age 53, unknown 27.0
2087 Female, age 72, unknown 25.0
1995 Male, age 72, unknown 24.3
2587 Male, age 74, left hemisphere 23.9
2261 Male, age 18, unknown 23.3
1895 Male, age 76, right hemisphere 23.1
1913 Female, age 42, unknown 22.9
1839 Male, age 51, unknown 22.5
2668 Female, age 75, unknown 22.0
2664 Male, age 75, both hemispheres 17.1
Ventral tegmental area
nTPM: 22.8
2410 Female, age 72, unknown 28.2
2218 Male, age 76, both hemispheres 25.0
1915 Female, age 42, unknown 22.3
2223 Female, age 72, unknown 21.9
1942 Male, age 51, unknown 21.1
2021 Male, age 53, unknown 18.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 22.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 22.8
Samples: 139

Max nTPM: 45.9
Min nTPM: 7.9
Std nTPM: 6.5
Median nTPM: 21.0
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 45.9
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 41.6
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 38.7
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 37.7
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 37.5
GTEX-13QJC-0011-R2b-SM-5PNUN 60-69 years, female 35.9
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 35.3
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 35.3
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 35.1
GTEX-1EKGG-0011-R2a-SM-CE6R8 60-69 years, male 34.7
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 34.0
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 30.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 30.3
FF:10158-103A5 76 years, female 30.3

MIDBRAIN - Pig RNA-seqi
Average nTPM 46.5
Pig sample Sample description nTPM
Substantia nigra
nTPM: 45.7
Samples: 4

Max nTPM: 54.4
Min nTPM: 39.8
Sample A Female 54.4
Sample B Female 39.8
Sample C Male 42.9
Sample D Male 45.7
Midbrain
nTPM: 46.6
Samples: 4

Max nTPM: 54.0
Min nTPM: 41.1
Sample A Female 54.0
Sample B Female 47.4
Sample C Male 43.7
Sample D Male 41.1
Periaqueductal gray
nTPM: 41.5
Samples: 3

Max nTPM: 43.7
Min nTPM: 38.6
Sample B Female 43.7
Sample C Male 42.3
Sample D Male 38.6
Superior colliculi
nTPM: 46.4
Samples: 4

Max nTPM: 54.9
Min nTPM: 41.4
Sample A Female 54.9
Sample B Female 41.4
Sample C Male 45.0
Sample D Male 44.3

MIDBRAIN - Mouse RNA-seqi
Average nTPM 56.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 56.5
Samples: 4

Max nTPM: 61.8
Min nTPM: 53.9
Sample A Male 61.8
Sample B Male 53.9
Sample C Female 54.1
Sample D Female 56.0

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.7
68523300 Antisense, RP_050118_02_E02, Mouse strain C57BL/6J (56 days, male) 0.7

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