BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Medium
Neuronal cells: Medium
RNA expressioni
Consensus:78.4 nTPM
HPA Brain:103.0 nTPM
GTEx:78.4 nTPM
FANTOM5:48.6 Scaled Tags Per Million
Pig:3.5 nTPM
Mouse:33.6 nTPM
Allen mouse:0.8 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA009078
Glial cells Medium
Neuronal cells Medium



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 103.0
Sample id Sample description nTPM
Caudate nucleus
nTPM: 72.7
2481 Female, age 94, left hemisphere 89.0
2288 Male, age 75, left hemisphere 84.7
2846 Female, age 79, unknown 72.7
1854 Male, age 80, left hemisphere 71.7
1781 Male, age 74, unknown 67.8
1857 Female, age 85, left hemisphere 67.8
2289 Male, age 61, right hemisphere 64.0
2290 Female, age 72, unknown 64.0
Globus pallidus, externus
nTPM: 96.9
2772 Female, age 79, unknown 119.9
1996 Male, age 80, right hemisphere 117.6
2395 Male, age 75, both hemispheres 98.1
2646 Male, age 61, right hemisphere 77.4
2567 Female, age 72, unknown 71.8
Globus pallidus, internus
nTPM: 103.0
2778 Female, age 91, both hemispheres 115.7
1818 Male, age 74, unknown 115.4
2287 Male, age 75, right hemisphere 112.8
2037 Male, age 80, right hemisphere 109.7
2111 Female, age 85, right hemisphere 99.2
2483 Female, age 94, right hemisphere 89.6
2566 Female, age 72, unknown 78.8
Nucleus accumbens
nTPM: 77.0
2391 Female, age 94, left hemisphere 98.3
2286 Male, age 75, left hemisphere 83.7
2698 Female, age 72, unknown 82.9
1856 Female, age 91, right hemisphere 78.2
2732 Male, age 80, right hemisphere 74.0
2824 Male, age 61, right hemisphere 68.6
1806 Female, age 85, left hemisphere 65.1
1783 Male, age 74, unknown 65.0
Nucleus basalis of Meynert
nTPM: 74.6
2821 Male, age 75, both hemispheres 81.9
2569 Male, age 61, both hemispheres 72.8
2393 Male, age 80, right hemisphere 72.0
2484 Female, age 94, left hemisphere 71.6
Nucleus of the diagonal band
nTPM: 78.9
1812 Female, age 91, both hemispheres 89.2
2029 Male, age 61, right hemisphere 80.9
2775 Male, age 80, right hemisphere 80.2
2195 Female, age 85, both hemispheres 74.4
1979 Male, age 74, unknown 70.1
Putamen
nTPM: 70.1
2482 Female, age 94, left hemisphere 86.9
2466 Female, age 79, unknown 72.8
1829 Male, age 74, unknown 72.4
1937 Female, age 91, right hemisphere 67.5
2647 Male, age 75, left hemisphere 66.4
2489 Female, age 72, unknown 65.2
1838 Male, age 80, right hemisphere 59.2
Septal nuclei
nTPM: 75.7
2009 Female, age 91, both hemispheres 81.7
2394 Male, age 61, left hemisphere 81.6
2629 Female, age 94, right hemisphere 81.6
2199 Male, age 80, right hemisphere 78.2
2031 Female, age 72, unknown 76.5
1960 Male, age 74, unknown 71.5
2059 Female, age 85, both hemispheres 58.9
Stria terminalis, bed nucleus
nTPM: 72.0
1974 Female, age 91, both hemispheres 78.6
2486 Female, age 94, both hemispheres 68.8
2201 Male, age 74, unknown 68.7

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 78.4
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 72.1
Samples: 246

Max nTPM: 156.6
Min nTPM: 48.8
Std nTPM: 15.2
Median nTPM: 69.7
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 156.6
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 152.1
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 135.6
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 133.7
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 124.8
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 109.3
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 108.3
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 107.5
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 100.8
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 100.2
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 98.0
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 67.6
Samples: 246

Max nTPM: 141.9
Min nTPM: 43.7
Std nTPM: 15.4
Median nTPM: 65.6
GTEX-11DYG-0011-R6a-SM-DO936 60-69 years, male 141.9
GTEX-1HFI6-0011-R6b-SM-CM2SR 40-49 years, male 127.5
GTEX-147F4-0011-R6b-SM-5S2UP 50-59 years, male 124.2
GTEX-1C6WA-0011-R6a-SM-7PBYP 60-69 years, male 122.3
GTEX-1H3O1-0011-R6b-SM-CL54U 60-69 years, male 120.9
GTEX-ZUA1-0011-R6b-SM-4YCDD 40-49 years, male 115.7
GTEX-1EKGG-0011-R6a-SM-CL538 60-69 years, male 112.9
GTEX-11DXW-0011-R6a-SM-DO11N 40-49 years, male 109.3
GTEX-12WSD-0011-R6b-SM-5P9JU 60-69 years, female 108.9
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 102.7
GTEX-YFC4-0011-R6b-SM-4V6E1 40-49 years, female 99.6
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Brain - Putamen (basal ganglia)
Average nTPM: 78.4
Samples: 205

Max nTPM: 175.0
Min nTPM: 47.1
Std nTPM: 15.9
Median nTPM: 76.3
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 175.0
GTEX-14E7W-0011-R7b-SM-5ZZV4 70-79 years, male 126.9
GTEX-1LSNL-0011-R7a-SM-EYYWI 50-59 years, male 116.6
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 114.6
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 113.6
GTEX-17HII-0011-R7a-SM-79OMS 50-59 years, male 111.7
GTEX-12WSE-0011-R7a-SM-5PNWF 20-29 years, male 111.0
GTEX-1I1CD-0011-R7a-SM-CMKHA 60-69 years, female 108.7
GTEX-1IKOH-0011-R7b-SM-CKZPH 60-69 years, female 107.0
GTEX-1EN7A-0011-R7b-SM-9QEHX 40-49 years, male 106.0
GTEX-1GZ2Q-0011-R7b-SM-9OSWN 40-49 years, male 105.3
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 48.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 40.0
FF:10164-103B2 76 years, female 40.0
Nucleus accumbens
Scaled Tags Per Million: 37.6
FF:10037-101F1 23-56 years, mixed 37.6
Putamen
Scaled Tags Per Million: 45.9
FF:10176-103C5 60 years, female 45.9
Globus pallidus
Scaled Tags Per Million: 48.6
FF:10175-103C4 60 years, female 72.1
FF:10161-103A8 76 years, female 25.1

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 3.5
Pig sample Sample description nTPM
Caudate
nTPM: 2.6
Samples: 4

Max nTPM: 3.9
Min nTPM: 1.7
Sample A Female 2.7
Sample B Female 1.7
Sample C Male 2.0
Sample D Male 3.9
Putamen
nTPM: 3.5
Samples: 4

Max nTPM: 4.6
Min nTPM: 2.5
Sample A Female 4.6
Sample B Female 3.8
Sample C Male 2.5
Sample D Male 3.0
Septum
nTPM: 3.0
Samples: 4

Max nTPM: 4.0
Min nTPM: 2.1
Sample A Female 2.4
Sample B Female 3.6
Sample C Male 2.1
Sample D Male 4.0
Ventral pallidum
nTPM: 3.5
Samples: 4

Max nTPM: 5.1
Min nTPM: 2.5
Sample A Female 5.1
Sample B Female 3.2
Sample C Male 3.3
Sample D Male 2.5

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 33.6
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 32.4
Samples: 4

Max nTPM: 34.7
Min nTPM: 31.5
Sample A Male 34.7
Sample B Male 31.5
Sample C Female 31.9
Sample D Female 31.6
Septum
nTPM: 33.6
Samples: 4

Max nTPM: 36.2
Min nTPM: 31.2
Sample A Male 31.2
Sample B Male 32.9
Sample C Female 36.2
Sample D Female 33.9
Ventral forebrain
nTPM: 33.4
Samples: 4

Max nTPM: 37.0
Min nTPM: 30.1
Sample A Male 30.1
Sample B Male 32.5
Sample C Female 37.0
Sample D Female 33.9

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.8
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.7
70429130 Antisense, RP_050614_01_A10, Mouse strain C57BL/6J (56 days, male) 0.7
Pallidum
Expression energy: 0.8
70429130 Antisense, RP_050614_01_A10, Mouse strain C57BL/6J (56 days, male) 0.8

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