HIPPOCAMPAL FORMATION - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:47.5 nTPM
HPA Brain:22.9 nTPM
GTEx:47.5 nTPM
FANTOM5:46.4 Scaled Tags Per Million
Pig:34.2 nTPM
Mouse:142.3 nTPM
Allen mouse:1.4 Expression energy

HIPPOCAMPAL FORMATION - Annotated protein expression
Pending normal tissue analysis

HIPPOCAMPUS - Antibody stainingi
Antibody HPA030425
Glial cells Low
Neuronal cells Low



HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 22.9
Sample id Sample description nTPM
Hippocampus
nTPM: 20.4
1898 Male, age 80, left hemisphere 28.3
1855 Male, age 76, left hemisphere 22.2
2529 Female, age 94, left hemisphere 19.1
2621 Female, age 67, right hemisphere 19.0
2148 Female, age 91, left hemisphere 17.2
1911 Female, age 85, right hemisphere 16.8
Dentate gyrus
nTPM: 20.1
2010 Male, age 76, both hemispheres 27.4
1927 Female, age 91, both hemispheres 20.9
2246 Female, age 85, both hemispheres 19.8
2528 Male, age 74, both hemispheres 18.4
2530 Female, age 94, left hemisphere 18.4
2531 Female, age 67, both hemispheres 15.6
Entorhinal gyrus
nTPM: 17.4
1938 Female, age 85, left hemisphere 21.4
2764 Male, age 80, right hemisphere 18.4
1787 Male, age 76, left hemisphere 18.1
2117 Female, age 91, right hemisphere 17.3
2686 Male, age 75, right hemisphere 15.1
2613 Female, age 94, left hemisphere 14.1
Hippocampus, CA1
nTPM: 22.9
2749 Male, age 80, left hemisphere 31.1
1873 Female, age 85, both hemispheres 23.2
2527 Male, age 74, both hemispheres 21.0
2045 Male, age 76, both hemispheres 20.9
2082 Female, age 91, right hemisphere 18.0
Hippocampus, CA2
nTPM: 21.9
1892 Male, age 76, both hemispheres 31.1
1963 Male, age 80, left hemisphere 26.4
2249 Male, age 74, both hemispheres 22.9
1940 Female, age 85, left hemisphere 18.7
2437 Female, age 94, left hemisphere 17.5
2113 Female, age 91, right hemisphere 14.8
Hippocampus, CA3
nTPM: 20.3
1867 Male, age 76, both hemispheres 25.9
2137 Male, age 80, left hemisphere 23.3
2436 Male, age 74, both hemispheres 20.9
1891 Female, age 85, both hemispheres 20.7
2620 Female, age 94, left hemisphere 17.8
2861 Female, age 67, both hemispheres 13.2
Parahippocampal cortex
nTPM: 18.3
1850 Male, age 80, both hemispheres 26.5
2018 Male, age 76, both hemispheres 21.1
1933 Female, age 85, both hemispheres 20.3
2245 Female, age 91, both hemispheres 19.7
2250 Female, age 67, right hemisphere 18.3
1990 Female, age 91, right hemisphere 17.7
2532 Female, age 72, left hemisphere 16.9
2692 Male, age 74, both hemispheres 16.0
2693 Female, age 94, both hemispheres 14.7
2622 Female, age 67, right hemisphere 12.1
Perirhinal gyrus
nTPM: 21.5
1847 Female, age 91, left hemisphere 26.6
1841 Female, age 85, right hemisphere 23.0
1794 Male, age 80, right hemisphere 21.7
2848 Male, age 76, right hemisphere 19.9
2521 Female, age 94, right hemisphere 16.5
Subiculum
nTPM: 19.5
1977 Female, age 85, both hemispheres 22.3
1901 Male, age 80, both hemispheres 21.5
2619 Male, age 74, both hemispheres 19.6
2042 Male, age 76, both hemispheres 18.9
2729 Female, age 91, right hemisphere 17.4
2438 Female, age 94, left hemisphere 17.2

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 47.5
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 47.5
Samples: 197

Max nTPM: 106.4
Min nTPM: 24.4
Std nTPM: 15.3
Median nTPM: 43.4
GTEX-1IOXB-0011-R1a-SM-D4P27 50-59 years, male 106.4
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 101.2
GTEX-1F75A-0011-R1b-SM-CE6RA 50-59 years, male 99.7
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 90.9
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 85.1
GTEX-13NYB-0011-R1b-SM-5KM4F 40-49 years, male 82.6
GTEX-T6MN-0011-R1A-SM-32QOY 50-59 years, male 82.2
GTEX-1GMR8-0011-R1b-SM-CJI2O 50-59 years, female 82.0
GTEX-1CB4G-0011-R1b-SM-9QEHT 60-69 years, male 81.8
GTEX-14PN4-0011-R1b-SM-69LP8 50-59 years, male 81.4
GTEX-17HG3-0011-R1a-SM-7LG6H 30-39 years, female 79.9
Show allShow less

HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 46.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 46.4
FF:10169-103B7 60 years, female 58.1
FF:10153-102I9 76 years, female 34.8

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 34.2
Pig sample Sample description nTPM
Subiculum
nTPM: 26.0
Samples: 4

Max nTPM: 31.9
Min nTPM: 23.5
Sample A Female 31.9
Sample B Female 25.0
Sample C Male 23.7
Sample D Male 23.5
Dorsal hippocampus
nTPM: 34.2
Samples: 4

Max nTPM: 39.0
Min nTPM: 26.4
Sample A Female 37.2
Sample B Female 34.1
Sample C Male 39.0
Sample D Male 26.4
Entorhinal cortex
nTPM: 30.6
Samples: 4

Max nTPM: 38.6
Min nTPM: 25.9
Sample A Female 26.9
Sample B Female 38.6
Sample C Male 30.9
Sample D Male 25.9
Ventral hippocampus
nTPM: 31.0
Samples: 4

Max nTPM: 33.5
Min nTPM: 25.3
Sample A Female 32.2
Sample B Female 25.3
Sample C Male 33.0
Sample D Male 33.5

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 142.3
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 110.4
Samples: 4

Max nTPM: 115.4
Min nTPM: 105.4
Sample A Male 105.4
Sample B Male 115.4
Sample C Female 115.0
Sample D Female 105.8
Hippocampal formation
nTPM: 142.3
Samples: 4

Max nTPM: 154.4
Min nTPM: 128.9
Sample A Male 154.4
Sample B Male 128.9
Sample C Female 150.4
Sample D Female 135.6

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 1.4
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 1.4
69133818 Antisense, RP_050321_02_C12, Mouse strain C57BL/6J (56 days, male) 1.4

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org