MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:58.0 nTPM
HPA Brain:24.8 nTPM
GTEx:58.0 nTPM
FANTOM5:44.5 Scaled Tags Per Million
Pig:44.8 nTPM
Mouse:112.2 nTPM
Allen mouse:0.4 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 24.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 19.2
2411 Female, age 72, unknown 22.5
1870 Female, age 42, unknown 22.0
1827 Male, age 72, unknown 21.6
2019 Male, age 18, unknown 20.6
2828 Female, age 72, unknown 19.9
1833 Male, age 53, unknown 19.6
1830 Male, age 51, unknown 18.1
2219 Male, age 76, both hemispheres 17.5
2666 Male, age 74, left hemisphere 15.7
2586 Male, age 75, left hemisphere 14.2
Dorsal raphe nucleus
nTPM: 22.3
2298 Female, age 72, unknown 28.3
2047 Male, age 72, unknown 23.4
2750 Male, age 76, both hemispheres 23.1
1828 Male, age 53, unknown 19.3
2016 Female, age 72, unknown 17.5
Inferior colliculus
nTPM: 19.2
2097 Female, age 72, unknown 21.7
1890 Male, age 53, unknown 19.7
1848 Female, age 42, unknown 19.0
2849 Male, age 72, unknown 16.6
Median raphe nucleus
nTPM: 22.4
2220 Male, age 76, midline 22.4
Periaquaductal grey, anterior
nTPM: 22.2
1947 Male, age 18, unknown 26.4
1795 Male, age 51, unknown 22.1
2502 Female, age 75, unknown 18.2
Periaquaductal grey, dorsal
nTPM: 18.8
1840 Male, age 53, unknown 20.7
2850 Male, age 76, both hemispheres 20.5
2464 Female, age 72, unknown 17.7
1831 Male, age 72, unknown 16.2
Periaquaductal grey, lateral
nTPM: 20.0
2272 Male, age 74, both hemispheres 25.1
2053 Male, age 18, unknown 18.9
2140 Male, age 76, both hemispheres 15.9
Pretectal area
nTPM: 21.2
2273 Male, age 74, both hemispheres 25.0
1817 Female, age 42, unknown 23.2
1816 Male, age 51, unknown 22.6
2224 Female, age 72, unknown 22.2
2007 Male, age 72, unknown 22.0
1815 Male, age 53, unknown 21.2
2316 Male, age 76, right hemisphere 20.2
1944 Female, age 72, unknown 19.8
2825 Male, age 18, unknown 19.8
2667 Female, age 75, unknown 19.3
2407 Male, age 75, both hemispheres 17.3
Red nucleus
nTPM: 20.8
2725 Female, age 75, unknown 32.6
1821 Female, age 72, unknown 25.2
2503 Female, age 72, unknown 22.9
1865 Male, age 51, unknown 21.2
2588 Male, age 74, left hemisphere 20.4
1904 Male, age 53, unknown 20.0
2823 Male, age 76, right hemisphere 19.9
1954 Female, age 42, unknown 19.5
2769 Male, age 72, unknown 18.3
2227 Male, age 72, unknown 18.0
2785 Male, age 18, unknown 17.1
2584 Male, age 75, left hemisphere 14.8
Substantia nigra
nTPM: 24.8
2241 Male, age 72, unknown 34.7
1916 Female, age 42, unknown 32.7
1851 Male, age 51, unknown 30.6
2409 Female, age 72, unknown 27.0
1941 Male, age 53, unknown 23.7
2699 Male, age 18, unknown 23.3
1889 Female, age 72, unknown 22.2
2665 Male, age 74, both hemispheres 19.4
2590 Female, age 75, unknown 18.5
2583 Male, age 75, right hemisphere 16.0
Superior colliculus
nTPM: 19.1
2587 Male, age 74, left hemisphere 23.3
1895 Male, age 76, right hemisphere 20.8
2668 Female, age 75, unknown 20.4
1796 Male, age 53, unknown 20.2
2261 Male, age 18, unknown 19.8
1913 Female, age 42, unknown 19.2
2087 Female, age 72, unknown 18.3
1995 Male, age 72, unknown 17.5
1839 Male, age 51, unknown 17.0
2664 Male, age 75, both hemispheres 14.2
Ventral tegmental area
nTPM: 23.9
2410 Female, age 72, unknown 28.0
1915 Female, age 42, unknown 26.5
2223 Female, age 72, unknown 24.6
2218 Male, age 76, both hemispheres 22.8
2021 Male, age 53, unknown 22.3
1942 Male, age 51, unknown 19.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 58.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 58.0
Samples: 139

Max nTPM: 117.3
Min nTPM: 33.0
Std nTPM: 14.2
Median nTPM: 55.7
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 117.3
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 104.0
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 103.0
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 94.6
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 90.6
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 89.5
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 88.4
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 84.2
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 79.5
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 79.3
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 79.1
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 44.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 44.5
FF:10158-103A5 76 years, female 44.5

MIDBRAIN - Pig RNA-seqi
Average nTPM 44.8
Pig sample Sample description nTPM
Substantia nigra
nTPM: 44.8
Samples: 4

Max nTPM: 56.6
Min nTPM: 33.4
Sample A Female 56.6
Sample B Female 38.9
Sample C Male 50.3
Sample D Male 33.4
Midbrain
nTPM: 42.2
Samples: 4

Max nTPM: 53.5
Min nTPM: 34.4
Sample A Female 44.5
Sample B Female 53.5
Sample C Male 34.4
Sample D Male 36.4
Periaqueductal gray
nTPM: 43.6
Samples: 3

Max nTPM: 48.2
Min nTPM: 38.0
Sample B Female 44.7
Sample C Male 48.2
Sample D Male 38.0
Superior colliculi
nTPM: 39.9
Samples: 4

Max nTPM: 46.7
Min nTPM: 32.0
Sample A Female 46.7
Sample B Female 32.0
Sample C Male 38.0
Sample D Male 42.9

MIDBRAIN - Mouse RNA-seqi
Average nTPM 112.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 112.2
Samples: 4

Max nTPM: 116.0
Min nTPM: 109.7
Sample A Male 116.0
Sample B Male 111.0
Sample C Female 112.2
Sample D Female 109.7

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.4
69133818 Antisense, RP_050321_02_C12, Mouse strain C57BL/6J (56 days, male) 0.4

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