MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:28.2 nTPM
HPA Brain:68.9 nTPM
GTEx:28.2 nTPM
FANTOM5:75.4 Scaled Tags Per Million
Pig:49.5 nTPM
Mouse:8.9 nTPM
Allen mouse:11.6 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 68.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 68.5
2586 Male, age 75, left hemisphere 87.0
1833 Male, age 53, unknown 72.3
2828 Female, age 72, unknown 71.3
1830 Male, age 51, unknown 70.2
2219 Male, age 76, both hemispheres 67.7
2411 Female, age 72, unknown 67.6
1870 Female, age 42, unknown 63.3
2666 Male, age 74, left hemisphere 62.4
1827 Male, age 72, unknown 62.1
2019 Male, age 18, unknown 61.1
Dorsal raphe nucleus
nTPM: 58.2
2750 Male, age 76, both hemispheres 73.6
2047 Male, age 72, unknown 57.2
2016 Female, age 72, unknown 55.2
1828 Male, age 53, unknown 53.8
2298 Female, age 72, unknown 51.3
Inferior colliculus
nTPM: 55.5
2849 Male, age 72, unknown 57.7
1848 Female, age 42, unknown 55.1
2097 Female, age 72, unknown 55.0
1890 Male, age 53, unknown 54.0
Median raphe nucleus
nTPM: 63.2
2220 Male, age 76, midline 63.2
Periaquaductal grey, anterior
nTPM: 58.0
1947 Male, age 18, unknown 63.6
1795 Male, age 51, unknown 55.6
2502 Female, age 75, unknown 54.6
Periaquaductal grey, dorsal
nTPM: 50.3
2464 Female, age 72, unknown 60.7
1831 Male, age 72, unknown 50.0
1840 Male, age 53, unknown 46.7
2850 Male, age 76, both hemispheres 43.8
Periaquaductal grey, lateral
nTPM: 50.9
2053 Male, age 18, unknown 54.4
2272 Male, age 74, both hemispheres 50.5
2140 Male, age 76, both hemispheres 47.8
Pretectal area
nTPM: 60.6
2667 Female, age 75, unknown 73.1
1815 Male, age 53, unknown 69.0
2407 Male, age 75, both hemispheres 66.8
2316 Male, age 76, right hemisphere 62.2
2825 Male, age 18, unknown 62.0
2007 Male, age 72, unknown 61.6
1817 Female, age 42, unknown 59.2
2224 Female, age 72, unknown 56.8
1816 Male, age 51, unknown 53.4
2273 Male, age 74, both hemispheres 52.7
1944 Female, age 72, unknown 50.0
Red nucleus
nTPM: 68.9
1904 Male, age 53, unknown 79.8
1865 Male, age 51, unknown 76.3
2769 Male, age 72, unknown 73.6
2227 Male, age 72, unknown 73.3
2785 Male, age 18, unknown 71.9
2503 Female, age 72, unknown 69.2
2584 Male, age 75, left hemisphere 69.0
1821 Female, age 72, unknown 68.0
2823 Male, age 76, right hemisphere 67.0
2588 Male, age 74, left hemisphere 66.0
1954 Female, age 42, unknown 59.9
2725 Female, age 75, unknown 53.2
Substantia nigra
nTPM: 57.0
2583 Male, age 75, right hemisphere 65.3
1851 Male, age 51, unknown 63.6
1889 Female, age 72, unknown 60.1
1916 Female, age 42, unknown 59.8
2665 Male, age 74, both hemispheres 59.1
2590 Female, age 75, unknown 57.4
2699 Male, age 18, unknown 55.4
1941 Male, age 53, unknown 51.6
2409 Female, age 72, unknown 49.6
2241 Male, age 72, unknown 47.6
Superior colliculus
nTPM: 64.9
2664 Male, age 75, both hemispheres 77.3
2668 Female, age 75, unknown 71.5
1995 Male, age 72, unknown 69.7
1913 Female, age 42, unknown 68.5
1796 Male, age 53, unknown 65.0
2587 Male, age 74, left hemisphere 64.0
1895 Male, age 76, right hemisphere 63.0
1839 Male, age 51, unknown 60.7
2261 Male, age 18, unknown 57.9
2087 Female, age 72, unknown 51.4
Ventral tegmental area
nTPM: 60.8
2223 Female, age 72, unknown 66.6
1915 Female, age 42, unknown 62.8
2410 Female, age 72, unknown 62.2
2218 Male, age 76, both hemispheres 59.5
1942 Male, age 51, unknown 58.9
2021 Male, age 53, unknown 55.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 28.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 28.2
Samples: 139

Max nTPM: 50.8
Min nTPM: 14.9
Std nTPM: 6.3
Median nTPM: 27.5
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 50.8
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 48.3
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 47.3
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 45.5
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 43.5
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 40.9
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 40.0
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 39.8
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 37.4
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 37.2
GTEX-T5JC-0011-R2A-SM-32PLZ 20-29 years, male 37.0
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 75.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 75.4
FF:10158-103A5 76 years, female 75.4

MIDBRAIN - Pig RNA-seqi
Average nTPM 49.5
Pig sample Sample description nTPM
Substantia nigra
nTPM: 49.5
Samples: 4

Max nTPM: 57.5
Min nTPM: 40.9
Sample A Female 56.3
Sample B Female 43.4
Sample C Male 57.5
Sample D Male 40.9
Midbrain
nTPM: 40.3
Samples: 4

Max nTPM: 52.6
Min nTPM: 31.2
Sample A Female 52.6
Sample B Female 42.9
Sample C Male 31.2
Sample D Male 34.5
Periaqueductal gray
nTPM: 41.4
Samples: 3

Max nTPM: 49.5
Min nTPM: 35.8
Sample B Female 39.0
Sample C Male 49.5
Sample D Male 35.8
Superior colliculi
nTPM: 38.1
Samples: 4

Max nTPM: 45.2
Min nTPM: 32.5
Sample A Female 45.2
Sample B Female 38.2
Sample C Male 32.5
Sample D Male 36.4

MIDBRAIN - Mouse RNA-seqi
Average nTPM 8.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 8.9
Samples: 4

Max nTPM: 13.5
Min nTPM: 6.3
Sample A Male 13.5
Sample B Male 9.5
Sample C Female 6.3
Sample D Female 6.4

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 11.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 11.6
176962 Antisense, RP_040507_02_B11, Mouse strain C57BL/6J (56 days, male) 11.6
130515 Antisense, RP_040507_02_B11, Mouse strain C57BL/6J (56 days, male) 3.9

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