MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:4.1 nTPM
HPA Brain:114.6 nTPM
GTEx:4.1 nTPM
FANTOM5:9.6 Scaled Tags Per Million
Pig:48.9 nTPM
Mouse:33.6 nTPM
Allen mouse:8.0 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 114.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 70.3
2219 Male, age 76, both hemispheres 105.2
1827 Male, age 72, unknown 84.9
2828 Female, age 72, unknown 77.6
2666 Male, age 74, left hemisphere 76.2
2411 Female, age 72, unknown 67.4
2586 Male, age 75, left hemisphere 66.8
1833 Male, age 53, unknown 62.2
1830 Male, age 51, unknown 55.2
1870 Female, age 42, unknown 54.8
2019 Male, age 18, unknown 52.3
Dorsal raphe nucleus
nTPM: 70.1
2047 Male, age 72, unknown 87.9
2298 Female, age 72, unknown 87.9
2750 Male, age 76, both hemispheres 76.3
1828 Male, age 53, unknown 51.3
2016 Female, age 72, unknown 47.1
Inferior colliculus
nTPM: 76.0
2097 Female, age 72, unknown 101.1
2849 Male, age 72, unknown 75.1
1848 Female, age 42, unknown 66.4
1890 Male, age 53, unknown 61.5
Median raphe nucleus
nTPM: 103.0
2220 Male, age 76, midline 103.0
Periaquaductal grey, anterior
nTPM: 114.6
2502 Female, age 75, unknown 170.0
1795 Male, age 51, unknown 95.0
1947 Male, age 18, unknown 78.7
Periaquaductal grey, dorsal
nTPM: 74.6
1840 Male, age 53, unknown 86.1
2464 Female, age 72, unknown 83.5
1831 Male, age 72, unknown 66.9
2850 Male, age 76, both hemispheres 62.0
Periaquaductal grey, lateral
nTPM: 56.3
2140 Male, age 76, both hemispheres 70.3
2053 Male, age 18, unknown 59.4
2272 Male, age 74, both hemispheres 39.4
Pretectal area
nTPM: 73.0
1816 Male, age 51, unknown 102.7
2667 Female, age 75, unknown 92.2
2224 Female, age 72, unknown 81.4
2007 Male, age 72, unknown 78.2
1944 Female, age 72, unknown 76.3
1817 Female, age 42, unknown 75.3
2825 Male, age 18, unknown 72.6
1815 Male, age 53, unknown 71.9
2316 Male, age 76, right hemisphere 65.5
2407 Male, age 75, both hemispheres 54.2
2273 Male, age 74, both hemispheres 33.0
Red nucleus
nTPM: 38.1
2785 Male, age 18, unknown 53.6
2584 Male, age 75, left hemisphere 52.4
2588 Male, age 74, left hemisphere 46.7
2503 Female, age 72, unknown 43.9
2227 Male, age 72, unknown 39.4
2769 Male, age 72, unknown 38.0
2823 Male, age 76, right hemisphere 38.0
1954 Female, age 42, unknown 35.6
1904 Male, age 53, unknown 30.7
1821 Female, age 72, unknown 30.3
1865 Male, age 51, unknown 27.9
2725 Female, age 75, unknown 20.6
Substantia nigra
nTPM: 64.1
1916 Female, age 42, unknown 97.4
2665 Male, age 74, both hemispheres 92.7
1941 Male, age 53, unknown 84.3
1851 Male, age 51, unknown 75.0
1889 Female, age 72, unknown 61.5
2699 Male, age 18, unknown 61.3
2241 Male, age 72, unknown 57.8
2409 Female, age 72, unknown 45.6
2590 Female, age 75, unknown 35.3
2583 Male, age 75, right hemisphere 30.4
Superior colliculus
nTPM: 73.3
2668 Female, age 75, unknown 102.4
1796 Male, age 53, unknown 97.9
2664 Male, age 75, both hemispheres 86.8
2087 Female, age 72, unknown 79.8
2261 Male, age 18, unknown 77.4
1839 Male, age 51, unknown 74.9
1895 Male, age 76, right hemisphere 71.4
2587 Male, age 74, left hemisphere 55.5
1913 Female, age 42, unknown 46.2
1995 Male, age 72, unknown 41.1
Ventral tegmental area
nTPM: 81.0
2218 Male, age 76, both hemispheres 94.8
2223 Female, age 72, unknown 88.1
1915 Female, age 42, unknown 82.1
1942 Male, age 51, unknown 77.9
2021 Male, age 53, unknown 73.9
2410 Female, age 72, unknown 69.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 4.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 4.1
Samples: 139

Max nTPM: 14.9
Min nTPM: 0.1
Std nTPM: 3.5
Median nTPM: 2.7
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 14.9
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 14.7
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 13.6
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 13.5
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 13.2
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 12.8
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 12.8
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 11.9
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 11.6
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 11.4
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 11.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 9.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 9.6
FF:10158-103A5 76 years, female 9.6

MIDBRAIN - Pig RNA-seqi
Average nTPM 48.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 42.1
Samples: 4

Max nTPM: 63.6
Min nTPM: 16.8
Sample A Female 56.5
Sample B Female 31.3
Sample C Male 63.6
Sample D Male 16.8
Midbrain
nTPM: 48.9
Samples: 4

Max nTPM: 76.5
Min nTPM: 13.5
Sample A Female 13.5
Sample B Female 42.1
Sample C Male 63.3
Sample D Male 76.5
Periaqueductal gray
nTPM: 42.5
Samples: 3

Max nTPM: 53.6
Min nTPM: 35.7
Sample B Female 38.2
Sample C Male 53.6
Sample D Male 35.7
Superior colliculi
nTPM: 42.4
Samples: 4

Max nTPM: 58.5
Min nTPM: 15.9
Sample A Female 55.5
Sample B Female 15.9
Sample C Male 39.5
Sample D Male 58.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 33.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 33.6
Samples: 4

Max nTPM: 34.2
Min nTPM: 32.2
Sample A Male 33.9
Sample B Male 32.2
Sample C Female 34.1
Sample D Female 34.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 8.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 8.0
75831724 Antisense, RP_060601_02_A09, Mouse strain C57BL/6J (56 days, male) 8.0

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