HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Not detected
Neuronal cells: Low
RNA expressioni
Consensus:8.9 nTPM
HPA Brain:20.6 nTPM
GTEx:8.9 nTPM
FANTOM5:6.3 Scaled Tags Per Million
Pig:14.6 nTPM
Mouse:63.8 nTPM
Allen mouse:9.1 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA008175
Glial cells Not detected
Neuronal cells Low



HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 20.6
Sample id Sample description nTPM
Hippocampus
nTPM: 9.8
1898 Male, age 80, left hemisphere 12.1
2529 Female, age 94, left hemisphere 11.9
2621 Female, age 67, right hemisphere 10.7
2148 Female, age 91, left hemisphere 9.1
1911 Female, age 85, right hemisphere 8.0
1855 Male, age 76, left hemisphere 7.0
Dentate gyrus
nTPM: 8.7
2530 Female, age 94, left hemisphere 12.0
2528 Male, age 74, both hemispheres 11.8
1927 Female, age 91, both hemispheres 9.6
2010 Male, age 76, both hemispheres 6.6
2246 Female, age 85, both hemispheres 6.1
2531 Female, age 67, both hemispheres 6.0
Entorhinal gyrus
nTPM: 20.6
2613 Female, age 94, left hemisphere 31.0
1938 Female, age 85, left hemisphere 22.2
2686 Male, age 75, right hemisphere 22.2
2764 Male, age 80, right hemisphere 19.5
1787 Male, age 76, left hemisphere 16.3
2117 Female, age 91, right hemisphere 12.3
Hippocampus, CA1
nTPM: 10.3
2527 Male, age 74, both hemispheres 15.2
2082 Female, age 91, right hemisphere 12.6
2749 Male, age 80, left hemisphere 11.8
1873 Female, age 85, both hemispheres 6.6
2045 Male, age 76, both hemispheres 5.2
Hippocampus, CA2
nTPM: 11.7
2437 Female, age 94, left hemisphere 19.2
2249 Male, age 74, both hemispheres 14.1
2113 Female, age 91, right hemisphere 12.2
1963 Male, age 80, left hemisphere 9.2
1892 Male, age 76, both hemispheres 8.5
1940 Female, age 85, left hemisphere 7.2
Hippocampus, CA3
nTPM: 8.6
2436 Male, age 74, both hemispheres 14.5
1867 Male, age 76, both hemispheres 10.4
1891 Female, age 85, both hemispheres 8.6
2861 Female, age 67, both hemispheres 7.0
2137 Male, age 80, left hemisphere 6.0
2620 Female, age 94, left hemisphere 4.9
Parahippocampal cortex
nTPM: 18.7
1990 Female, age 91, right hemisphere 27.3
1850 Male, age 80, both hemispheres 25.8
2622 Female, age 67, right hemisphere 25.6
2532 Female, age 72, left hemisphere 19.7
2692 Male, age 74, both hemispheres 17.7
1933 Female, age 85, both hemispheres 15.1
2245 Female, age 91, both hemispheres 14.9
2693 Female, age 94, both hemispheres 14.6
2250 Female, age 67, right hemisphere 14.1
2018 Male, age 76, both hemispheres 12.2
Perirhinal gyrus
nTPM: 19.8
1847 Female, age 91, left hemisphere 26.2
1794 Male, age 80, right hemisphere 24.0
2848 Male, age 76, right hemisphere 19.5
1841 Female, age 85, right hemisphere 17.3
2521 Female, age 94, right hemisphere 12.3
Subiculum
nTPM: 13.0
2619 Male, age 74, both hemispheres 18.3
2438 Female, age 94, left hemisphere 17.3
1977 Female, age 85, both hemispheres 13.6
1901 Male, age 80, both hemispheres 10.1
2042 Male, age 76, both hemispheres 9.4
2729 Female, age 91, right hemisphere 9.3

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 8.9
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 8.9
Samples: 197

Max nTPM: 25.4
Min nTPM: 1.8
Std nTPM: 3.8
Median nTPM: 8.1
GTEX-RNOR-0011-R1A-SM-CNNP5 50-59 years, female 25.4
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 19.8
GTEX-13OW6-0011-R1a-SM-5L3HQ 50-59 years, male 19.4
GTEX-1HGF4-0011-R1a-SM-CJI3S 60-69 years, male 18.9
GTEX-12WSD-0011-R1b-SM-5LZVY 60-69 years, female 18.5
GTEX-WL46-0011-R1A-SM-3LK6M 50-59 years, male 18.4
GTEX-1313W-0011-R1b-SM-5EQ4A 50-59 years, female 17.9
GTEX-12WSH-0011-R1a-SM-5GU5V 50-59 years, male 17.6
GTEX-145MH-0011-R1b-SM-5PNWY 50-59 years, male 17.5
GTEX-1LG7Y-0011-R1a-SM-EYYWV 50-59 years, male 16.9
GTEX-13PDP-0011-R1a-SM-5PNX5 60-69 years, male 16.3
Show allShow less

HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 6.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 6.3
FF:10153-102I9 76 years, female 7.4
FF:10169-103B7 60 years, female 5.1

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 14.6
Pig sample Sample description nTPM
Subiculum
nTPM: 7.9
Samples: 4

Max nTPM: 12.7
Min nTPM: 5.9
Sample A Female 12.7
Sample B Female 6.4
Sample C Male 5.9
Sample D Male 6.6
Dorsal hippocampus
nTPM: 10.2
Samples: 4

Max nTPM: 13.0
Min nTPM: 5.7
Sample A Female 11.7
Sample B Female 13.0
Sample C Male 10.3
Sample D Male 5.7
Entorhinal cortex
nTPM: 14.6
Samples: 4

Max nTPM: 16.9
Min nTPM: 10.3
Sample A Female 15.9
Sample B Female 16.9
Sample C Male 10.3
Sample D Male 15.3
Ventral hippocampus
nTPM: 8.7
Samples: 4

Max nTPM: 14.4
Min nTPM: 4.5
Sample A Female 4.5
Sample B Female 6.5
Sample C Male 9.3
Sample D Male 14.4

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 63.8
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 50.9
Samples: 4

Max nTPM: 57.9
Min nTPM: 43.9
Sample A Male 45.1
Sample B Male 43.9
Sample C Female 56.6
Sample D Female 57.9
Hippocampal formation
nTPM: 63.9
Samples: 4

Max nTPM: 67.5
Min nTPM: 59.6
Sample A Male 63.1
Sample B Male 65.2
Sample C Female 59.6
Sample D Female 67.5

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 9.1
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 9.1
69173998 Antisense, RP_050329_01_G04, Mouse strain C57BL/6J (56 days, male) 11.1
75749739 Antisense, RP_060518_02_E07, Mouse strain C57BL/6J (56 days, male) 7.1

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org