MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:12.8 nTPM
HPA Brain:23.5 nTPM
GTEx:12.8 nTPM
FANTOM5:10.0 Scaled Tags Per Million
Pig:20.0 nTPM
Mouse:23.6 nTPM
Allen mouse:2.3 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 23.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 14.8
2019 Male, age 18, unknown 27.8
2666 Male, age 74, left hemisphere 19.8
1827 Male, age 72, unknown 18.6
2828 Female, age 72, unknown 16.4
2219 Male, age 76, both hemispheres 13.4
2411 Female, age 72, unknown 13.4
1870 Female, age 42, unknown 10.6
1830 Male, age 51, unknown 10.5
2586 Male, age 75, left hemisphere 8.6
1833 Male, age 53, unknown 8.4
Dorsal raphe nucleus
nTPM: 9.9
2298 Female, age 72, unknown 19.8
2750 Male, age 76, both hemispheres 9.6
1828 Male, age 53, unknown 7.4
2047 Male, age 72, unknown 6.7
2016 Female, age 72, unknown 5.9
Inferior colliculus
nTPM: 9.6
1890 Male, age 53, unknown 11.9
1848 Female, age 42, unknown 9.7
2097 Female, age 72, unknown 9.0
2849 Male, age 72, unknown 7.8
Median raphe nucleus
nTPM: 10.9
2220 Male, age 76, midline 10.9
Periaquaductal grey, anterior
nTPM: 22.8
1795 Male, age 51, unknown 30.4
1947 Male, age 18, unknown 25.3
2502 Female, age 75, unknown 12.6
Periaquaductal grey, dorsal
nTPM: 7.8
2464 Female, age 72, unknown 9.8
1831 Male, age 72, unknown 8.8
2850 Male, age 76, both hemispheres 6.9
1840 Male, age 53, unknown 5.7
Periaquaductal grey, lateral
nTPM: 9.0
2272 Male, age 74, both hemispheres 12.2
2053 Male, age 18, unknown 8.1
2140 Male, age 76, both hemispheres 6.7
Pretectal area
nTPM: 23.5
1816 Male, age 51, unknown 45.1
1944 Female, age 72, unknown 44.5
2667 Female, age 75, unknown 36.0
2007 Male, age 72, unknown 34.2
1817 Female, age 42, unknown 30.4
1815 Male, age 53, unknown 15.0
2273 Male, age 74, both hemispheres 12.5
2407 Male, age 75, both hemispheres 12.4
2825 Male, age 18, unknown 11.2
2224 Female, age 72, unknown 10.9
2316 Male, age 76, right hemisphere 6.4
Red nucleus
nTPM: 18.9
1865 Male, age 51, unknown 23.2
2588 Male, age 74, left hemisphere 23.2
1821 Female, age 72, unknown 23.0
2785 Male, age 18, unknown 22.8
2503 Female, age 72, unknown 22.4
1954 Female, age 42, unknown 20.9
2769 Male, age 72, unknown 19.4
2227 Male, age 72, unknown 18.9
2823 Male, age 76, right hemisphere 18.8
1904 Male, age 53, unknown 17.0
2584 Male, age 75, left hemisphere 9.8
2725 Female, age 75, unknown 7.0
Substantia nigra
nTPM: 14.6
1941 Male, age 53, unknown 47.3
1889 Female, age 72, unknown 22.6
2665 Male, age 74, both hemispheres 19.1
2583 Male, age 75, right hemisphere 11.7
2409 Female, age 72, unknown 9.4
2590 Female, age 75, unknown 8.0
1851 Male, age 51, unknown 7.6
1916 Female, age 42, unknown 7.6
2699 Male, age 18, unknown 6.5
2241 Male, age 72, unknown 6.1
Superior colliculus
nTPM: 20.7
2668 Female, age 75, unknown 55.8
2087 Female, age 72, unknown 36.6
2261 Male, age 18, unknown 18.7
1913 Female, age 42, unknown 18.2
1995 Male, age 72, unknown 16.7
1796 Male, age 53, unknown 14.2
1895 Male, age 76, right hemisphere 13.7
2587 Male, age 74, left hemisphere 13.7
2664 Male, age 75, both hemispheres 10.5
1839 Male, age 51, unknown 8.5
Ventral tegmental area
nTPM: 9.1
2410 Female, age 72, unknown 13.4
2218 Male, age 76, both hemispheres 8.9
2223 Female, age 72, unknown 8.4
1915 Female, age 42, unknown 8.2
1942 Male, age 51, unknown 8.2
2021 Male, age 53, unknown 7.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 12.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 12.8
Samples: 139

Max nTPM: 150.8
Min nTPM: 0.9
Std nTPM: 15.8
Median nTPM: 9.5
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 150.8
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 85.0
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 69.0
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 48.0
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 47.0
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 34.7
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 27.4
GTEX-WHSE-0011-R2A-SM-3P5ZL 20-29 years, male 26.9
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 25.2
GTEX-T5JC-0011-R2A-SM-32PLZ 20-29 years, male 21.8
GTEX-1LSNL-0011-R2a-SM-EZ6MK 50-59 years, male 21.0
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 10.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 10.0
FF:10158-103A5 76 years, female 10.0

MIDBRAIN - Pig RNA-seqi
Average nTPM 20.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 3.9
Samples: 4

Max nTPM: 7.3
Min nTPM: 1.9
Sample A Female 7.3
Sample B Female 3.3
Sample C Male 3.0
Sample D Male 1.9
Midbrain
nTPM: 14.2
Samples: 4

Max nTPM: 35.2
Min nTPM: 2.2
Sample A Female 2.2
Sample B Female 7.0
Sample C Male 35.2
Sample D Male 12.5
Periaqueductal gray
nTPM: 12.7
Samples: 3

Max nTPM: 15.1
Min nTPM: 9.7
Sample B Female 13.4
Sample C Male 15.1
Sample D Male 9.7
Superior colliculi
nTPM: 20.1
Samples: 4

Max nTPM: 46.0
Min nTPM: 7.5
Sample A Female 15.5
Sample B Female 11.2
Sample C Male 46.0
Sample D Male 7.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 23.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 23.6
Samples: 4

Max nTPM: 27.4
Min nTPM: 20.7
Sample A Male 24.7
Sample B Male 27.4
Sample C Female 20.7
Sample D Female 21.7

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 2.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.3
69173998 Antisense, RP_050329_01_G04, Mouse strain C57BL/6J (56 days, male) 3.1
75749739 Antisense, RP_060518_02_E07, Mouse strain C57BL/6J (56 days, male) 1.5

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