HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Low
Neuronal cells: High
RNA expressioni
Consensus:74.3 nTPM
HPA Brain:94.5 nTPM
GTEx:74.3 nTPM
FANTOM5:38.2 Scaled Tags Per Million
Pig:37.9 nTPM
Mouse:88.1 nTPM
Allen mouse:1.6 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA014063
Glial cells Low
Neuronal cells High



HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 94.5
Sample id Sample description nTPM
Hippocampus
nTPM: 84.5
2529 Female, age 94, left hemisphere 106.6
1898 Male, age 80, left hemisphere 91.6
2621 Female, age 67, right hemisphere 85.4
2148 Female, age 91, left hemisphere 85.0
1911 Female, age 85, right hemisphere 73.2
1855 Male, age 76, left hemisphere 65.2
Dentate gyrus
nTPM: 80.3
2530 Female, age 94, left hemisphere 102.2
2531 Female, age 67, both hemispheres 82.4
2528 Male, age 74, both hemispheres 79.0
1927 Female, age 91, both hemispheres 77.4
2246 Female, age 85, both hemispheres 74.6
2010 Male, age 76, both hemispheres 66.4
Entorhinal gyrus
nTPM: 94.5
2613 Female, age 94, left hemisphere 109.5
2764 Male, age 80, right hemisphere 94.5
2117 Female, age 91, right hemisphere 93.8
2686 Male, age 75, right hemisphere 92.5
1938 Female, age 85, left hemisphere 90.5
1787 Male, age 76, left hemisphere 86.5
Hippocampus, CA1
nTPM: 70.7
2749 Male, age 80, left hemisphere 81.0
2527 Male, age 74, both hemispheres 80.8
1873 Female, age 85, both hemispheres 70.7
2082 Female, age 91, right hemisphere 69.4
2045 Male, age 76, both hemispheres 51.6
Hippocampus, CA2
nTPM: 87.4
1963 Male, age 80, left hemisphere 108.4
2437 Female, age 94, left hemisphere 106.2
1940 Female, age 85, left hemisphere 87.0
2113 Female, age 91, right hemisphere 80.0
1892 Male, age 76, both hemispheres 76.4
2249 Male, age 74, both hemispheres 66.4
Hippocampus, CA3
nTPM: 76.1
2861 Female, age 67, both hemispheres 106.9
1867 Male, age 76, both hemispheres 76.0
2137 Male, age 80, left hemisphere 72.7
1891 Female, age 85, both hemispheres 71.1
2620 Female, age 94, left hemisphere 67.2
2436 Male, age 74, both hemispheres 62.8
Parahippocampal cortex
nTPM: 84.3
2622 Female, age 67, right hemisphere 99.7
2692 Male, age 74, both hemispheres 92.2
2245 Female, age 91, both hemispheres 88.9
1990 Female, age 91, right hemisphere 87.4
2532 Female, age 72, left hemisphere 84.5
1933 Female, age 85, both hemispheres 81.0
1850 Male, age 80, both hemispheres 80.4
2250 Female, age 67, right hemisphere 79.9
2018 Male, age 76, both hemispheres 79.3
2693 Female, age 94, both hemispheres 69.3
Perirhinal gyrus
nTPM: 82.7
1794 Male, age 80, right hemisphere 91.4
1847 Female, age 91, left hemisphere 90.2
2521 Female, age 94, right hemisphere 85.3
1841 Female, age 85, right hemisphere 82.3
2848 Male, age 76, right hemisphere 64.4
Subiculum
nTPM: 84.6
2619 Male, age 74, both hemispheres 93.6
2438 Female, age 94, left hemisphere 92.2
1901 Male, age 80, both hemispheres 86.1
1977 Female, age 85, both hemispheres 85.1
2729 Female, age 91, right hemisphere 79.9
2042 Male, age 76, both hemispheres 70.7

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 74.3
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 74.3
Samples: 197

Max nTPM: 176.8
Min nTPM: 27.9
Std nTPM: 23.7
Median nTPM: 72.6
GTEX-ZF28-0011-R1a-SM-4WWD1 60-69 years, male 176.8
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 154.0
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 153.1
GTEX-13FTY-0011-R1a-SM-5LZXE 40-49 years, female 147.5
GTEX-NL3H-0011-R1a-SM-48TDJ 60-69 years, male 137.3
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 133.7
GTEX-WVLH-0011-R1A-SM-4MVOK 50-59 years, male 132.6
GTEX-13NYB-0011-R1b-SM-5KM4F 40-49 years, male 130.3
GTEX-13FHP-0011-R1b-SM-5K7XL 50-59 years, male 129.1
GTEX-1GF9W-0011-R1a-SM-9QEIQ 60-69 years, male 122.0
GTEX-1LG7Y-0011-R1a-SM-EYYWV 50-59 years, male 120.4
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 38.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 38.2
FF:10153-102I9 76 years, female 40.0
FF:10169-103B7 60 years, female 36.3

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 37.9
Pig sample Sample description nTPM
Subiculum
nTPM: 26.7
Samples: 4

Max nTPM: 36.3
Min nTPM: 21.8
Sample A Female 36.3
Sample B Female 24.0
Sample C Male 24.6
Sample D Male 21.8
Dorsal hippocampus
nTPM: 33.9
Samples: 4

Max nTPM: 42.3
Min nTPM: 25.3
Sample A Female 42.3
Sample B Female 30.7
Sample C Male 37.3
Sample D Male 25.3
Entorhinal cortex
nTPM: 37.9
Samples: 4

Max nTPM: 50.9
Min nTPM: 28.4
Sample A Female 32.8
Sample B Female 50.9
Sample C Male 39.5
Sample D Male 28.4
Ventral hippocampus
nTPM: 30.9
Samples: 4

Max nTPM: 40.8
Min nTPM: 22.1
Sample A Female 31.1
Sample B Female 22.1
Sample C Male 40.8
Sample D Male 29.6

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 88.1
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 85.4
Samples: 4

Max nTPM: 88.3
Min nTPM: 81.9
Sample A Male 88.1
Sample B Male 83.1
Sample C Female 88.3
Sample D Female 81.9
Hippocampal formation
nTPM: 88.1
Samples: 4

Max nTPM: 94.0
Min nTPM: 84.9
Sample A Male 94.0
Sample B Male 84.9
Sample C Female 87.1
Sample D Female 86.4

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 1.6
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 1.6
68076533 Antisense, RP_040923_02_E04, Mouse strain C57BL/6J (56 days, male) 1.6

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