MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:92.4 nTPM
HPA Brain:120.7 nTPM
GTEx:92.4 nTPM
FANTOM5:42.5 Scaled Tags Per Million
Pig:53.2 nTPM
Mouse:105.1 nTPM
Allen mouse:1.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 120.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 116.5
2586 Male, age 75, left hemisphere 187.8
2019 Male, age 18, unknown 150.5
2828 Female, age 72, unknown 112.1
2666 Male, age 74, left hemisphere 108.1
2411 Female, age 72, unknown 107.3
1830 Male, age 51, unknown 103.5
1827 Male, age 72, unknown 103.1
1833 Male, age 53, unknown 101.3
1870 Female, age 42, unknown 99.8
2219 Male, age 76, both hemispheres 91.3
Dorsal raphe nucleus
nTPM: 102.5
1828 Male, age 53, unknown 117.9
2047 Male, age 72, unknown 109.1
2750 Male, age 76, both hemispheres 103.1
2016 Female, age 72, unknown 98.0
2298 Female, age 72, unknown 84.4
Inferior colliculus
nTPM: 100.5
1848 Female, age 42, unknown 111.8
1890 Male, age 53, unknown 101.2
2849 Male, age 72, unknown 99.8
2097 Female, age 72, unknown 89.3
Median raphe nucleus
nTPM: 97.7
2220 Male, age 76, midline 97.7
Periaquaductal grey, anterior
nTPM: 104.8
2502 Female, age 75, unknown 116.9
1795 Male, age 51, unknown 102.1
1947 Male, age 18, unknown 95.4
Periaquaductal grey, dorsal
nTPM: 80.8
2464 Female, age 72, unknown 91.2
1840 Male, age 53, unknown 89.6
2850 Male, age 76, both hemispheres 73.5
1831 Male, age 72, unknown 68.9
Periaquaductal grey, lateral
nTPM: 76.6
2140 Male, age 76, both hemispheres 79.1
2053 Male, age 18, unknown 76.1
2272 Male, age 74, both hemispheres 74.5
Pretectal area
nTPM: 100.4
2007 Male, age 72, unknown 143.6
1817 Female, age 42, unknown 130.9
1816 Male, age 51, unknown 114.6
1944 Female, age 72, unknown 106.1
2407 Male, age 75, both hemispheres 104.8
1815 Male, age 53, unknown 101.0
2316 Male, age 76, right hemisphere 86.7
2667 Female, age 75, unknown 85.6
2825 Male, age 18, unknown 80.8
2224 Female, age 72, unknown 78.0
2273 Male, age 74, both hemispheres 72.1
Red nucleus
nTPM: 120.5
2785 Male, age 18, unknown 147.6
2584 Male, age 75, left hemisphere 135.5
2588 Male, age 74, left hemisphere 134.5
2227 Male, age 72, unknown 130.0
2769 Male, age 72, unknown 127.3
2503 Female, age 72, unknown 119.5
1821 Female, age 72, unknown 114.5
1954 Female, age 42, unknown 112.2
1904 Male, age 53, unknown 111.5
1865 Male, age 51, unknown 110.5
2823 Male, age 76, right hemisphere 104.9
2725 Female, age 75, unknown 97.6
Substantia nigra
nTPM: 120.7
2665 Male, age 74, both hemispheres 150.7
1916 Female, age 42, unknown 142.7
1851 Male, age 51, unknown 132.8
2583 Male, age 75, right hemisphere 125.2
2590 Female, age 75, unknown 124.6
1941 Male, age 53, unknown 120.9
1889 Female, age 72, unknown 114.0
2699 Male, age 18, unknown 101.2
2241 Male, age 72, unknown 98.4
2409 Female, age 72, unknown 96.8
Superior colliculus
nTPM: 103.4
2664 Male, age 75, both hemispheres 140.6
2668 Female, age 75, unknown 123.2
2087 Female, age 72, unknown 105.4
1796 Male, age 53, unknown 102.4
1839 Male, age 51, unknown 101.2
2261 Male, age 18, unknown 98.9
2587 Male, age 74, left hemisphere 95.7
1895 Male, age 76, right hemisphere 95.4
1995 Male, age 72, unknown 88.2
1913 Female, age 42, unknown 82.6
Ventral tegmental area
nTPM: 107.5
1915 Female, age 42, unknown 117.4
2410 Female, age 72, unknown 116.3
2223 Female, age 72, unknown 110.3
2218 Male, age 76, both hemispheres 104.3
1942 Male, age 51, unknown 101.6
2021 Male, age 53, unknown 95.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 92.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 92.4
Samples: 139

Max nTPM: 146.4
Min nTPM: 39.7
Std nTPM: 19.5
Median nTPM: 94.3
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 146.4
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 135.0
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 130.5
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 129.9
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 129.5
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 129.3
GTEX-T5JC-0011-R2A-SM-32PLZ 20-29 years, male 128.1
GTEX-11PRG-0011-R2a-SM-69LQ5 50-59 years, male 125.7
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 121.8
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 121.3
GTEX-147GR-0011-R2b-SM-5S2RQ 60-69 years, male 119.4
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 42.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 42.5
FF:10158-103A5 76 years, female 42.5

MIDBRAIN - Pig RNA-seqi
Average nTPM 53.2
Pig sample Sample description nTPM
Substantia nigra
nTPM: 39.5
Samples: 4

Max nTPM: 56.5
Min nTPM: 28.2
Sample A Female 56.5
Sample B Female 32.0
Sample C Male 41.4
Sample D Male 28.2
Midbrain
nTPM: 42.4
Samples: 4

Max nTPM: 58.0
Min nTPM: 36.0
Sample A Female 37.8
Sample B Female 37.7
Sample C Male 58.0
Sample D Male 36.0
Periaqueductal gray
nTPM: 31.4
Samples: 3

Max nTPM: 35.8
Min nTPM: 24.5
Sample B Female 35.8
Sample C Male 33.9
Sample D Male 24.5
Superior colliculi
nTPM: 53.2
Samples: 4

Max nTPM: 61.9
Min nTPM: 44.6
Sample A Female 59.1
Sample B Female 44.6
Sample C Male 61.9
Sample D Male 47.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 105.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 105.1
Samples: 4

Max nTPM: 111.3
Min nTPM: 100.7
Sample A Male 111.3
Sample B Male 101.7
Sample C Female 100.7
Sample D Female 106.7

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.2
68076533 Antisense, RP_040923_02_E04, Mouse strain C57BL/6J (56 days, male) 1.2

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