MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:325.6 nTPM
HPA Brain:180.2 nTPM
GTEx:325.6 nTPM
FANTOM5:106.0 Scaled Tags Per Million
Pig:170.5 nTPM
Mouse:147.7 nTPM
Allen mouse:9.6 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 180.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 148.4
2411 Female, age 72, unknown 176.9
2019 Male, age 18, unknown 172.1
2586 Male, age 75, left hemisphere 168.3
1827 Male, age 72, unknown 148.7
2219 Male, age 76, both hemispheres 148.4
2828 Female, age 72, unknown 144.2
1870 Female, age 42, unknown 139.9
1833 Male, age 53, unknown 134.7
2666 Male, age 74, left hemisphere 125.5
1830 Male, age 51, unknown 125.4
Dorsal raphe nucleus
nTPM: 145.4
2047 Male, age 72, unknown 153.7
2750 Male, age 76, both hemispheres 151.0
1828 Male, age 53, unknown 150.6
2298 Female, age 72, unknown 149.4
2016 Female, age 72, unknown 122.2
Inferior colliculus
nTPM: 139.5
2097 Female, age 72, unknown 151.8
1890 Male, age 53, unknown 148.5
1848 Female, age 42, unknown 136.7
2849 Male, age 72, unknown 120.8
Median raphe nucleus
nTPM: 144.7
2220 Male, age 76, midline 144.7
Periaquaductal grey, anterior
nTPM: 149.3
1795 Male, age 51, unknown 161.3
1947 Male, age 18, unknown 151.5
2502 Female, age 75, unknown 135.0
Periaquaductal grey, dorsal
nTPM: 122.4
2464 Female, age 72, unknown 126.7
1840 Male, age 53, unknown 124.6
1831 Male, age 72, unknown 122.3
2850 Male, age 76, both hemispheres 116.1
Periaquaductal grey, lateral
nTPM: 134.0
2272 Male, age 74, both hemispheres 165.1
2053 Male, age 18, unknown 124.3
2140 Male, age 76, both hemispheres 112.6
Pretectal area
nTPM: 149.8
2007 Male, age 72, unknown 192.2
1817 Female, age 42, unknown 175.1
1816 Male, age 51, unknown 173.0
1815 Male, age 53, unknown 153.2
2273 Male, age 74, both hemispheres 152.7
1944 Female, age 72, unknown 148.4
2224 Female, age 72, unknown 147.4
2667 Female, age 75, unknown 144.1
2825 Male, age 18, unknown 130.4
2316 Male, age 76, right hemisphere 124.7
2407 Male, age 75, both hemispheres 106.9
Red nucleus
nTPM: 180.2
2503 Female, age 72, unknown 219.8
2725 Female, age 75, unknown 206.8
2588 Male, age 74, left hemisphere 192.1
2769 Male, age 72, unknown 188.9
1821 Female, age 72, unknown 186.5
2227 Male, age 72, unknown 184.5
2785 Male, age 18, unknown 178.8
1904 Male, age 53, unknown 176.5
1865 Male, age 51, unknown 174.6
1954 Female, age 42, unknown 173.7
2823 Male, age 76, right hemisphere 152.5
2584 Male, age 75, left hemisphere 127.9
Substantia nigra
nTPM: 162.7
1916 Female, age 42, unknown 228.7
1851 Male, age 51, unknown 186.0
1889 Female, age 72, unknown 175.7
1941 Male, age 53, unknown 173.7
2699 Male, age 18, unknown 154.5
2409 Female, age 72, unknown 150.2
2665 Male, age 74, both hemispheres 149.6
2583 Male, age 75, right hemisphere 140.3
2590 Female, age 75, unknown 137.5
2241 Male, age 72, unknown 130.9
Superior colliculus
nTPM: 138.7
1796 Male, age 53, unknown 160.5
2668 Female, age 75, unknown 157.8
2087 Female, age 72, unknown 151.0
2261 Male, age 18, unknown 145.8
1913 Female, age 42, unknown 133.7
1895 Male, age 76, right hemisphere 131.7
2587 Male, age 74, left hemisphere 129.3
1995 Male, age 72, unknown 128.4
1839 Male, age 51, unknown 126.8
2664 Male, age 75, both hemispheres 122.2
Ventral tegmental area
nTPM: 167.8
2410 Female, age 72, unknown 202.9
1915 Female, age 42, unknown 177.8
2218 Male, age 76, both hemispheres 177.7
2223 Female, age 72, unknown 175.3
1942 Male, age 51, unknown 148.2
2021 Male, age 53, unknown 124.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 325.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 325.6
Samples: 139

Max nTPM: 854.2
Min nTPM: 136.5
Std nTPM: 96.5
Median nTPM: 308.1
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 854.2
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 705.2
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 583.2
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 550.2
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 511.0
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 496.2
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 470.7
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 467.2
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 465.1
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 463.4
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 457.1
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 106.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 106.0
FF:10158-103A5 76 years, female 106.0

MIDBRAIN - Pig RNA-seqi
Average nTPM 170.5
Pig sample Sample description nTPM
Substantia nigra
nTPM: 134.3
Samples: 4

Max nTPM: 207.1
Min nTPM: 84.9
Sample A Female 207.1
Sample B Female 124.0
Sample C Male 121.2
Sample D Male 84.9
Midbrain
nTPM: 152.8
Samples: 4

Max nTPM: 183.9
Min nTPM: 124.9
Sample A Female 183.9
Sample B Female 130.5
Sample C Male 172.0
Sample D Male 124.9
Periaqueductal gray
nTPM: 100.2
Samples: 3

Max nTPM: 110.0
Min nTPM: 81.0
Sample B Female 109.6
Sample C Male 110.0
Sample D Male 81.0
Superior colliculi
nTPM: 170.5
Samples: 4

Max nTPM: 223.9
Min nTPM: 131.3
Sample A Female 223.9
Sample B Female 147.9
Sample C Male 178.7
Sample D Male 131.3

MIDBRAIN - Mouse RNA-seqi
Average nTPM 147.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 147.7
Samples: 4

Max nTPM: 176.5
Min nTPM: 125.5
Sample A Male 176.5
Sample B Male 127.9
Sample C Female 125.5
Sample D Female 160.9

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 9.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 9.6
68545312 Antisense, RP_050118_03_C01, Mouse strain C57BL/6J (56 days, male) 9.6

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