MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:74.6 nTPM
HPA Brain:231.3 nTPM
GTEx:74.6 nTPM
FANTOM5:18.1 Scaled Tags Per Million
Pig:118.5 nTPM
Mouse:104.2 nTPM
Allen mouse:7.6 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 231.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 183.7
2019 Male, age 18, unknown 396.6
2586 Male, age 75, left hemisphere 199.0
2666 Male, age 74, left hemisphere 190.8
2411 Female, age 72, unknown 172.5
2828 Female, age 72, unknown 168.2
1833 Male, age 53, unknown 157.9
1830 Male, age 51, unknown 151.4
1870 Female, age 42, unknown 140.7
2219 Male, age 76, both hemispheres 140.3
1827 Male, age 72, unknown 119.4
Dorsal raphe nucleus
nTPM: 122.1
2750 Male, age 76, both hemispheres 177.1
1828 Male, age 53, unknown 141.5
2047 Male, age 72, unknown 105.5
2016 Female, age 72, unknown 102.1
2298 Female, age 72, unknown 84.2
Inferior colliculus
nTPM: 136.6
1890 Male, age 53, unknown 165.9
2097 Female, age 72, unknown 151.6
1848 Female, age 42, unknown 123.0
2849 Male, age 72, unknown 105.8
Median raphe nucleus
nTPM: 108.0
2220 Male, age 76, midline 108.0
Periaquaductal grey, anterior
nTPM: 125.9
2502 Female, age 75, unknown 138.2
1795 Male, age 51, unknown 122.6
1947 Male, age 18, unknown 116.9
Periaquaductal grey, dorsal
nTPM: 84.0
2464 Female, age 72, unknown 129.9
1831 Male, age 72, unknown 89.6
1840 Male, age 53, unknown 67.7
2850 Male, age 76, both hemispheres 49.0
Periaquaductal grey, lateral
nTPM: 81.9
2272 Male, age 74, both hemispheres 114.5
2053 Male, age 18, unknown 72.8
2140 Male, age 76, both hemispheres 58.5
Pretectal area
nTPM: 185.8
2007 Male, age 72, unknown 381.7
1817 Female, age 42, unknown 332.4
1944 Female, age 72, unknown 262.5
1815 Male, age 53, unknown 225.4
1816 Male, age 51, unknown 224.9
2667 Female, age 75, unknown 161.5
2316 Male, age 76, right hemisphere 110.3
2407 Male, age 75, both hemispheres 101.1
2273 Male, age 74, both hemispheres 94.7
2825 Male, age 18, unknown 76.3
2224 Female, age 72, unknown 72.8
Red nucleus
nTPM: 231.3
2785 Male, age 18, unknown 419.5
2588 Male, age 74, left hemisphere 288.3
2769 Male, age 72, unknown 240.1
2227 Male, age 72, unknown 232.2
2823 Male, age 76, right hemisphere 226.4
1904 Male, age 53, unknown 222.7
2503 Female, age 72, unknown 220.2
2584 Male, age 75, left hemisphere 208.2
1865 Male, age 51, unknown 200.0
1821 Female, age 72, unknown 196.6
1954 Female, age 42, unknown 186.6
2725 Female, age 75, unknown 135.4
Substantia nigra
nTPM: 151.0
1889 Female, age 72, unknown 249.1
2583 Male, age 75, right hemisphere 172.7
1916 Female, age 42, unknown 169.4
1941 Male, age 53, unknown 151.8
1851 Male, age 51, unknown 151.5
2590 Female, age 75, unknown 151.3
2665 Male, age 74, both hemispheres 147.1
2409 Female, age 72, unknown 127.5
2241 Male, age 72, unknown 102.1
2699 Male, age 18, unknown 87.2
Superior colliculus
nTPM: 149.1
2668 Female, age 75, unknown 207.0
2087 Female, age 72, unknown 201.4
2587 Male, age 74, left hemisphere 163.6
1913 Female, age 42, unknown 144.7
1895 Male, age 76, right hemisphere 143.3
1995 Male, age 72, unknown 140.4
2261 Male, age 18, unknown 136.0
1839 Male, age 51, unknown 130.6
1796 Male, age 53, unknown 125.2
2664 Male, age 75, both hemispheres 99.0
Ventral tegmental area
nTPM: 136.5
2410 Female, age 72, unknown 178.2
2223 Female, age 72, unknown 162.6
2218 Male, age 76, both hemispheres 135.8
1942 Male, age 51, unknown 132.6
1915 Female, age 42, unknown 119.1
2021 Male, age 53, unknown 91.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 74.6
GTEx sample id Sample description nTPM
52.373.694.112.2155.6020406080100120140160
Brain - Substantia nigra
Average nTPM: 74.6
Samples: 139

Max nTPM: 161.1
Min nTPM: 12.2
Std nTPM: 32.0
Median nTPM: 73.6
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 161.1
GTEX-T5JC-0011-R2A-SM-32PLZ 20-29 years, male 158.9
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 157.8
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 155.6
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 150.3
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 149.4
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 140.0
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 136.0
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 123.6
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 122.0
GTEX-13N2G-0011-R2a-SM-5MR4Q 60-69 years, male 120.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 18.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 18.1
FF:10158-103A5 76 years, female 18.1

MIDBRAIN - Pig RNA-seqi
Average nTPM 118.5
Pig sample Sample description nTPM
64.575.884.039.998.90102030405060708090
 		Substantia nigra
nTPM: 72.6
Samples: 4

Max nTPM: 98.9
Min nTPM: 39.9
Sample A Female 98.9
Sample B Female 39.9
Sample C Male 72.7
Sample D Male 79.0
94.7105.7114.567.8135.00102030405060708090100110120130
 		Midbrain
nTPM: 103.6
Samples: 4

Max nTPM: 135.0
Min nTPM: 67.8
Sample A Female 103.7
Sample B Female 67.8
Sample C Male 135.0
Sample D Male 107.7
52.061.066.343.171.6010203040506070
 		Periaqueductal gray
nTPM: 58.6
Samples: 3

Max nTPM: 71.6
Min nTPM: 43.1
Sample B Female 71.6
Sample C Male 61.0
Sample D Male 43.1
103.1133.0148.456.8151.1020406080100120140
 		Superior colliculi
nTPM: 118.5
Samples: 4

Max nTPM: 151.1
Min nTPM: 56.8
Sample A Female 151.1
Sample B Female 56.8
Sample C Male 147.5
Sample D Male 118.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 104.2
Mouse sample Sample description nTPM
102.2105.0107.099.5107.20102030405060708090100
 		Midbrain
nTPM: 104.2
Samples: 4

Max nTPM: 107.2
Min nTPM: 99.5
Sample A Male 103.1
Sample B Male 99.5
Sample C Female 106.9
Sample D Female 107.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 7.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 7.6
73512185 Antisense, RP_050705_01_B04, Mouse strain C57BL/6J (56 days, male) 7.6
70723465 Antisense, RP_050705_01_B04, Mouse strain C57BL/6J (56 days, male) 7.4

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