HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: High
Neuronal cells: Medium
RNA expressioni
Consensus:16.6 nTPM
HPA Brain:59.4 nTPM
GTEx:16.6 nTPM
FANTOM5:172.3 Scaled Tags Per Million
Pig:57.7 nTPM
Mouse:28.4 nTPM
Allen mouse:14.3 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA000690Antibody HPA030083
Glial cells HighHigh
Neuronal cells MediumMedium





HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 59.4
Sample id Sample description nTPM
Hippocampus
nTPM: 56.7
2621 Female, age 67, right hemisphere 70.4
2529 Female, age 94, left hemisphere 60.7
1855 Male, age 76, left hemisphere 54.5
2148 Female, age 91, left hemisphere 54.4
1911 Female, age 85, right hemisphere 50.5
1898 Male, age 80, left hemisphere 49.5
Dentate gyrus
nTPM: 55.2
2246 Female, age 85, both hemispheres 59.3
2530 Female, age 94, left hemisphere 57.2
2528 Male, age 74, both hemispheres 54.8
1927 Female, age 91, both hemispheres 53.7
2531 Female, age 67, both hemispheres 53.7
2010 Male, age 76, both hemispheres 52.4
Entorhinal gyrus
nTPM: 55.4
1938 Female, age 85, left hemisphere 60.0
2117 Female, age 91, right hemisphere 59.8
1787 Male, age 76, left hemisphere 57.2
2764 Male, age 80, right hemisphere 56.3
2613 Female, age 94, left hemisphere 53.7
2686 Male, age 75, right hemisphere 45.6
Hippocampus, CA1
nTPM: 58.7
2749 Male, age 80, left hemisphere 67.9
1873 Female, age 85, both hemispheres 60.2
2527 Male, age 74, both hemispheres 59.3
2045 Male, age 76, both hemispheres 57.6
2082 Female, age 91, right hemisphere 48.6
Hippocampus, CA2
nTPM: 51.5
2249 Male, age 74, both hemispheres 57.8
1940 Female, age 85, left hemisphere 53.5
1892 Male, age 76, both hemispheres 52.0
2113 Female, age 91, right hemisphere 49.1
1963 Male, age 80, left hemisphere 48.4
2437 Female, age 94, left hemisphere 48.3
Hippocampus, CA3
nTPM: 59.4
2620 Female, age 94, left hemisphere 72.3
2861 Female, age 67, both hemispheres 64.2
2137 Male, age 80, left hemisphere 62.5
2436 Male, age 74, both hemispheres 57.4
1867 Male, age 76, both hemispheres 50.3
1891 Female, age 85, both hemispheres 49.6
Parahippocampal cortex
nTPM: 55.7
2622 Female, age 67, right hemisphere 68.9
2245 Female, age 91, both hemispheres 66.5
2532 Female, age 72, left hemisphere 61.7
2250 Female, age 67, right hemisphere 59.2
2018 Male, age 76, both hemispheres 53.9
1933 Female, age 85, both hemispheres 51.6
1850 Male, age 80, both hemispheres 50.9
2692 Male, age 74, both hemispheres 50.6
1990 Female, age 91, right hemisphere 49.3
2693 Female, age 94, both hemispheres 44.3
Perirhinal gyrus
nTPM: 53.9
1794 Male, age 80, right hemisphere 59.6
2848 Male, age 76, right hemisphere 54.3
1841 Female, age 85, right hemisphere 53.4
2521 Female, age 94, right hemisphere 51.1
1847 Female, age 91, left hemisphere 50.9
Subiculum
nTPM: 59.3
2619 Male, age 74, both hemispheres 66.3
2042 Male, age 76, both hemispheres 64.9
2438 Female, age 94, left hemisphere 61.1
1901 Male, age 80, both hemispheres 56.9
1977 Female, age 85, both hemispheres 53.5
2729 Female, age 91, right hemisphere 53.2

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 16.6
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 16.6
Samples: 197

Max nTPM: 24.7
Min nTPM: 10.5
Std nTPM: 2.5
Median nTPM: 16.7
GTEX-Q2AG-0011-R1A-SM-2HMJI 40-49 years, female 24.7
GTEX-P44G-0011-R1A-SM-2I3FE 30-39 years, male 23.8
GTEX-13NYS-0011-R1b-SM-5MR55 60-69 years, male 23.4
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 23.1
GTEX-13JVG-0011-R1a-SM-5KM32 60-69 years, male 22.9
GTEX-1H1ZS-0011-R1b-SM-A9G1E 70-79 years, male 22.7
GTEX-1CAV2-0011-R1a-SM-ARZML 40-49 years, female 22.6
GTEX-13NZ8-0011-R1b-SM-5KM3V 60-69 years, female 21.7
GTEX-WWYW-0011-R1A-SM-3TW8G 50-59 years, female 21.5
GTEX-13S7M-0011-R1b-SM-5PNZE 60-69 years, female 21.2
GTEX-13JUV-0011-R1a-SM-5LZY4 40-49 years, female 21.1
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 172.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 172.3
FF:10169-103B7 60 years, female 194.2
FF:10153-102I9 76 years, female 150.4

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 57.7
Pig sample Sample description nTPM
Subiculum
nTPM: 49.3
Samples: 4

Max nTPM: 61.8
Min nTPM: 44.7
Sample A Female 61.8
Sample B Female 44.7
Sample C Male 45.8
Sample D Male 45.0
Dorsal hippocampus
nTPM: 57.7
Samples: 4

Max nTPM: 68.5
Min nTPM: 51.4
Sample A Female 68.5
Sample B Female 53.8
Sample C Male 57.2
Sample D Male 51.4
Entorhinal cortex
nTPM: 46.7
Samples: 4

Max nTPM: 55.5
Min nTPM: 42.9
Sample A Female 55.5
Sample B Female 44.1
Sample C Male 42.9
Sample D Male 44.2
Ventral hippocampus
nTPM: 53.7
Samples: 4

Max nTPM: 64.8
Min nTPM: 40.9
Sample A Female 48.8
Sample B Female 40.9
Sample C Male 64.8
Sample D Male 60.1

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 28.4
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 27.3
Samples: 4

Max nTPM: 30.2
Min nTPM: 25.8
Sample A Male 27.0
Sample B Male 26.3
Sample C Female 25.8
Sample D Female 30.2
Hippocampal formation
nTPM: 28.5
Samples: 4

Max nTPM: 30.2
Min nTPM: 25.3
Sample A Male 25.3
Sample B Male 28.8
Sample C Female 30.2
Sample D Female 29.5

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 14.3
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 14.3
68546398 Antisense, RP_050120_02_D09, Mouse strain C57BL/6J (56 days, male) 14.3

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