MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:16.4 nTPM
HPA Brain:58.6 nTPM
GTEx:16.4 nTPM
FANTOM5:153.6 Scaled Tags Per Million
Pig:65.8 nTPM
Mouse:25.4 nTPM
Allen mouse:9.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 58.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 55.7
1833 Male, age 53, unknown 61.0
2828 Female, age 72, unknown 59.0
2586 Male, age 75, left hemisphere 58.3
2019 Male, age 18, unknown 57.6
1830 Male, age 51, unknown 55.6
2666 Male, age 74, left hemisphere 54.1
2219 Male, age 76, both hemispheres 53.8
2411 Female, age 72, unknown 53.2
1827 Male, age 72, unknown 52.7
1870 Female, age 42, unknown 51.4
Dorsal raphe nucleus
nTPM: 49.9
2750 Male, age 76, both hemispheres 55.4
1828 Male, age 53, unknown 51.7
2298 Female, age 72, unknown 48.7
2016 Female, age 72, unknown 47.5
2047 Male, age 72, unknown 46.1
Inferior colliculus
nTPM: 54.1
2849 Male, age 72, unknown 70.0
1848 Female, age 42, unknown 51.9
1890 Male, age 53, unknown 49.3
2097 Female, age 72, unknown 45.1
Median raphe nucleus
nTPM: 57.4
2220 Male, age 76, midline 57.4
Periaquaductal grey, anterior
nTPM: 50.8
1947 Male, age 18, unknown 52.2
1795 Male, age 51, unknown 51.8
2502 Female, age 75, unknown 48.4
Periaquaductal grey, dorsal
nTPM: 55.1
2850 Male, age 76, both hemispheres 70.4
1831 Male, age 72, unknown 53.1
1840 Male, age 53, unknown 48.4
2464 Female, age 72, unknown 48.3
Periaquaductal grey, lateral
nTPM: 57.1
2140 Male, age 76, both hemispheres 63.3
2272 Male, age 74, both hemispheres 60.2
2053 Male, age 18, unknown 47.8
Pretectal area
nTPM: 57.6
1817 Female, age 42, unknown 69.0
2007 Male, age 72, unknown 62.0
1815 Male, age 53, unknown 61.7
1816 Male, age 51, unknown 60.8
2667 Female, age 75, unknown 59.5
2273 Male, age 74, both hemispheres 57.6
2316 Male, age 76, right hemisphere 54.9
2825 Male, age 18, unknown 52.9
2407 Male, age 75, both hemispheres 52.6
1944 Female, age 72, unknown 52.4
2224 Female, age 72, unknown 50.3
Red nucleus
nTPM: 58.6
2823 Male, age 76, right hemisphere 65.0
1821 Female, age 72, unknown 61.9
1954 Female, age 42, unknown 60.6
2769 Male, age 72, unknown 60.4
2227 Male, age 72, unknown 60.0
1865 Male, age 51, unknown 59.2
2725 Female, age 75, unknown 59.2
2785 Male, age 18, unknown 58.5
2584 Male, age 75, left hemisphere 57.2
2588 Male, age 74, left hemisphere 54.3
1904 Male, age 53, unknown 54.1
2503 Female, age 72, unknown 52.8
Substantia nigra
nTPM: 51.7
2665 Male, age 74, both hemispheres 63.6
2699 Male, age 18, unknown 60.4
1916 Female, age 42, unknown 57.4
2590 Female, age 75, unknown 56.0
1889 Female, age 72, unknown 53.1
1851 Male, age 51, unknown 50.7
1941 Male, age 53, unknown 50.6
2583 Male, age 75, right hemisphere 48.1
2409 Female, age 72, unknown 42.2
2241 Male, age 72, unknown 35.0
Superior colliculus
nTPM: 53.3
1995 Male, age 72, unknown 59.8
1796 Male, age 53, unknown 56.2
1895 Male, age 76, right hemisphere 55.8
1839 Male, age 51, unknown 55.4
2587 Male, age 74, left hemisphere 55.3
2261 Male, age 18, unknown 54.3
1913 Female, age 42, unknown 54.1
2087 Female, age 72, unknown 50.6
2668 Female, age 75, unknown 48.4
2664 Male, age 75, both hemispheres 43.3
Ventral tegmental area
nTPM: 51.9
2218 Male, age 76, both hemispheres 56.6
2021 Male, age 53, unknown 53.0
2223 Female, age 72, unknown 53.0
2410 Female, age 72, unknown 52.9
1915 Female, age 42, unknown 50.4
1942 Male, age 51, unknown 45.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 16.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 16.4
Samples: 139

Max nTPM: 35.5
Min nTPM: 10.8
Std nTPM: 3.5
Median nTPM: 15.8
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 35.5
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 27.1
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 26.4
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 25.1
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 24.5
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 24.3
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 24.3
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 23.0
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 22.5
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 21.7
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 21.7
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 153.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 153.6
FF:10158-103A5 76 years, female 153.6

MIDBRAIN - Pig RNA-seqi
Average nTPM 65.8
Pig sample Sample description nTPM
Substantia nigra
nTPM: 62.1
Samples: 4

Max nTPM: 71.6
Min nTPM: 54.3
Sample A Female 60.2
Sample B Female 54.3
Sample C Male 62.3
Sample D Male 71.6
Midbrain
nTPM: 65.8
Samples: 4

Max nTPM: 92.4
Min nTPM: 56.3
Sample A Female 92.4
Sample B Female 57.8
Sample C Male 56.5
Sample D Male 56.3
Periaqueductal gray
nTPM: 55.9
Samples: 3

Max nTPM: 58.5
Min nTPM: 54.3
Sample B Female 54.8
Sample C Male 58.5
Sample D Male 54.3
Superior colliculi
nTPM: 64.7
Samples: 4

Max nTPM: 71.7
Min nTPM: 57.4
Sample A Female 71.7
Sample B Female 57.4
Sample C Male 60.1
Sample D Male 69.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 25.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 25.4
Samples: 4

Max nTPM: 26.0
Min nTPM: 24.9
Sample A Male 25.6
Sample B Male 25.2
Sample C Female 26.0
Sample D Female 24.9

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 9.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 9.1
68546398 Antisense, RP_050120_02_D09, Mouse strain C57BL/6J (56 days, male) 9.1

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