MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:63.7 nTPM
HPA Brain:51.2 nTPM
GTEx:63.7 nTPM
FANTOM5:41.0 Scaled Tags Per Million
Pig:24.5 nTPM
Mouse:4.4 nTPM
Allen mouse:0.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 51.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 40.1
2828 Female, age 72, unknown 50.4
2411 Female, age 72, unknown 47.5
2019 Male, age 18, unknown 45.7
1870 Female, age 42, unknown 44.2
1830 Male, age 51, unknown 42.3
1833 Male, age 53, unknown 38.8
2666 Male, age 74, left hemisphere 38.4
2586 Male, age 75, left hemisphere 35.9
1827 Male, age 72, unknown 35.6
2219 Male, age 76, both hemispheres 21.8
Dorsal raphe nucleus
nTPM: 51.2
2298 Female, age 72, unknown 63.1
2016 Female, age 72, unknown 57.7
2750 Male, age 76, both hemispheres 48.9
2047 Male, age 72, unknown 43.6
1828 Male, age 53, unknown 42.7
Inferior colliculus
nTPM: 32.7
2097 Female, age 72, unknown 38.4
1890 Male, age 53, unknown 35.7
1848 Female, age 42, unknown 31.3
2849 Male, age 72, unknown 25.6
Median raphe nucleus
nTPM: 31.7
2220 Male, age 76, midline 31.7
Periaquaductal grey, anterior
nTPM: 37.3
1795 Male, age 51, unknown 39.5
2502 Female, age 75, unknown 37.9
1947 Male, age 18, unknown 34.5
Periaquaductal grey, dorsal
nTPM: 34.2
1831 Male, age 72, unknown 35.6
2850 Male, age 76, both hemispheres 35.2
2464 Female, age 72, unknown 34.1
1840 Male, age 53, unknown 31.8
Periaquaductal grey, lateral
nTPM: 41.8
2272 Male, age 74, both hemispheres 47.3
2140 Male, age 76, both hemispheres 39.6
2053 Male, age 18, unknown 38.4
Pretectal area
nTPM: 38.0
2316 Male, age 76, right hemisphere 50.8
2273 Male, age 74, both hemispheres 47.8
2224 Female, age 72, unknown 45.0
2007 Male, age 72, unknown 39.8
2825 Male, age 18, unknown 38.1
2407 Male, age 75, both hemispheres 34.9
1815 Male, age 53, unknown 34.5
1817 Female, age 42, unknown 34.3
1944 Female, age 72, unknown 33.5
2667 Female, age 75, unknown 30.2
1816 Male, age 51, unknown 29.4
Red nucleus
nTPM: 43.8
2769 Male, age 72, unknown 54.5
2785 Male, age 18, unknown 51.8
1904 Male, age 53, unknown 50.5
2503 Female, age 72, unknown 50.3
2227 Male, age 72, unknown 48.4
1865 Male, age 51, unknown 46.6
2823 Male, age 76, right hemisphere 45.0
1954 Female, age 42, unknown 39.6
1821 Female, age 72, unknown 39.5
2725 Female, age 75, unknown 36.8
2584 Male, age 75, left hemisphere 33.8
2588 Male, age 74, left hemisphere 29.2
Substantia nigra
nTPM: 37.0
2590 Female, age 75, unknown 53.4
2665 Male, age 74, both hemispheres 46.9
1851 Male, age 51, unknown 40.1
2699 Male, age 18, unknown 39.3
2583 Male, age 75, right hemisphere 38.0
1916 Female, age 42, unknown 36.8
1941 Male, age 53, unknown 32.7
1889 Female, age 72, unknown 30.8
2409 Female, age 72, unknown 26.7
2241 Male, age 72, unknown 24.8
Superior colliculus
nTPM: 38.6
1995 Male, age 72, unknown 56.2
1913 Female, age 42, unknown 50.1
2587 Male, age 74, left hemisphere 44.1
1796 Male, age 53, unknown 38.2
2668 Female, age 75, unknown 36.3
1839 Male, age 51, unknown 35.0
2087 Female, age 72, unknown 33.8
2664 Male, age 75, both hemispheres 32.2
1895 Male, age 76, right hemisphere 31.3
2261 Male, age 18, unknown 28.4
Ventral tegmental area
nTPM: 42.3
2021 Male, age 53, unknown 49.5
1915 Female, age 42, unknown 44.6
1942 Male, age 51, unknown 42.0
2223 Female, age 72, unknown 40.7
2410 Female, age 72, unknown 38.7
2218 Male, age 76, both hemispheres 38.2

MIDBRAIN - GTEx RNA-seqi
Average nTPM 63.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 63.7
Samples: 139

Max nTPM: 127.1
Min nTPM: 20.0
Std nTPM: 23.3
Median nTPM: 58.3
GTEX-14PN4-0011-R2a-SM-6EU2Y 50-59 years, male 127.1
GTEX-1F48J-0011-R2a-SM-CL535 50-59 years, female 123.1
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 121.2
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 120.6
GTEX-NPJ8-0011-R2a-SM-2TC6M 40-49 years, male 110.6
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 107.4
GTEX-NL4W-0011-R2a-SM-2I5GV 50-59 years, male 106.8
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 104.6
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 103.2
GTEX-PWO3-0011-R2A-SM-2S1OX 60-69 years, female 102.1
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 102.0
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 41.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 41.0
FF:10158-103A5 76 years, female 41.0

MIDBRAIN - Pig RNA-seqi
Average nTPM 24.5
Pig sample Sample description nTPM
Substantia nigra
nTPM: 14.3
Samples: 4

Max nTPM: 21.4
Min nTPM: 9.3
Sample A Female 15.9
Sample B Female 21.4
Sample C Male 9.3
Sample D Male 10.7
Midbrain
nTPM: 11.5
Samples: 4

Max nTPM: 27.9
Min nTPM: 4.2
Sample A Female 27.9
Sample B Female 7.8
Sample C Male 6.1
Sample D Male 4.2
Periaqueductal gray
nTPM: 10.7
Samples: 3

Max nTPM: 14.6
Min nTPM: 6.7
Sample B Female 6.7
Sample C Male 14.6
Sample D Male 10.8
Superior colliculi
nTPM: 24.5
Samples: 4

Max nTPM: 60.9
Min nTPM: 8.2
Sample A Female 18.6
Sample B Female 60.9
Sample C Male 10.2
Sample D Male 8.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 4.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 4.4
Samples: 4

Max nTPM: 5.3
Min nTPM: 3.1
Sample A Male 5.1
Sample B Male 3.1
Sample C Female 4.2
Sample D Female 5.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.2
2071 Antisense, RP_040420_01_B06, Mouse strain C57BL/6J (56 days, male) 0.3
2072 Antisense, RP_040420_01_B06, Mouse strain C57BL/6J (56 days, male) 0.2
79556668 Antisense, RP_071204_01_C01, Mouse strain C57BL/6J (56 days, male) 0.0
79632284 Antisense, RP_071204_01_C01, Mouse strain C57BL/6J (56 days, male) 0.0

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