MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:80.7 nTPM
HPA Brain:70.5 nTPM
GTEx:80.7 nTPM
FANTOM5:68.1 Scaled Tags Per Million
Pig:104.8 nTPM
Mouse:131.7 nTPM
Allen mouse:8.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 70.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 64.8
2586 Male, age 75, left hemisphere 79.9
2019 Male, age 18, unknown 70.1
2828 Female, age 72, unknown 68.0
2666 Male, age 74, left hemisphere 66.8
2411 Female, age 72, unknown 64.8
1827 Male, age 72, unknown 63.2
1870 Female, age 42, unknown 62.8
1833 Male, age 53, unknown 59.3
2219 Male, age 76, both hemispheres 56.6
1830 Male, age 51, unknown 56.0
Dorsal raphe nucleus
nTPM: 67.7
1828 Male, age 53, unknown 71.7
2047 Male, age 72, unknown 70.3
2298 Female, age 72, unknown 69.5
2016 Female, age 72, unknown 63.5
2750 Male, age 76, both hemispheres 63.2
Inferior colliculus
nTPM: 61.6
1890 Male, age 53, unknown 64.8
2097 Female, age 72, unknown 63.5
1848 Female, age 42, unknown 62.1
2849 Male, age 72, unknown 55.9
Median raphe nucleus
nTPM: 66.9
2220 Male, age 76, midline 66.9
Periaquaductal grey, anterior
nTPM: 64.4
1947 Male, age 18, unknown 65.7
2502 Female, age 75, unknown 65.2
1795 Male, age 51, unknown 62.3
Periaquaductal grey, dorsal
nTPM: 58.7
2850 Male, age 76, both hemispheres 65.3
1840 Male, age 53, unknown 60.5
2464 Female, age 72, unknown 56.5
1831 Male, age 72, unknown 52.6
Periaquaductal grey, lateral
nTPM: 58.6
2140 Male, age 76, both hemispheres 61.0
2053 Male, age 18, unknown 58.2
2272 Male, age 74, both hemispheres 56.7
Pretectal area
nTPM: 65.3
1816 Male, age 51, unknown 75.1
1817 Female, age 42, unknown 74.8
2007 Male, age 72, unknown 73.3
2667 Female, age 75, unknown 70.3
1815 Male, age 53, unknown 68.3
1944 Female, age 72, unknown 67.0
2224 Female, age 72, unknown 61.2
2273 Male, age 74, both hemispheres 58.3
2316 Male, age 76, right hemisphere 56.9
2825 Male, age 18, unknown 56.9
2407 Male, age 75, both hemispheres 56.4
Red nucleus
nTPM: 65.4
1954 Female, age 42, unknown 71.1
1821 Female, age 72, unknown 69.0
2823 Male, age 76, right hemisphere 68.5
2588 Male, age 74, left hemisphere 67.4
2503 Female, age 72, unknown 66.9
1865 Male, age 51, unknown 66.6
2785 Male, age 18, unknown 65.3
1904 Male, age 53, unknown 64.4
2725 Female, age 75, unknown 64.0
2769 Male, age 72, unknown 64.0
2227 Male, age 72, unknown 62.6
2584 Male, age 75, left hemisphere 54.8
Substantia nigra
nTPM: 70.5
1916 Female, age 42, unknown 86.7
2241 Male, age 72, unknown 79.9
1851 Male, age 51, unknown 73.8
2665 Male, age 74, both hemispheres 73.6
2699 Male, age 18, unknown 70.1
1889 Female, age 72, unknown 69.9
1941 Male, age 53, unknown 68.6
2583 Male, age 75, right hemisphere 64.7
2590 Female, age 75, unknown 62.5
2409 Female, age 72, unknown 54.9
Superior colliculus
nTPM: 62.4
1796 Male, age 53, unknown 65.0
2668 Female, age 75, unknown 64.9
2261 Male, age 18, unknown 64.2
2587 Male, age 74, left hemisphere 63.7
2087 Female, age 72, unknown 63.3
2664 Male, age 75, both hemispheres 63.3
1839 Male, age 51, unknown 61.9
1995 Male, age 72, unknown 61.6
1895 Male, age 76, right hemisphere 58.0
1913 Female, age 42, unknown 57.9
Ventral tegmental area
nTPM: 66.3
2410 Female, age 72, unknown 72.7
1915 Female, age 42, unknown 72.4
2218 Male, age 76, both hemispheres 69.0
1942 Male, age 51, unknown 63.5
2223 Female, age 72, unknown 61.8
2021 Male, age 53, unknown 58.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 80.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 80.7
Samples: 139

Max nTPM: 153.3
Min nTPM: 48.8
Std nTPM: 15.9
Median nTPM: 78.6
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 153.3
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 131.6
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 121.9
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 119.4
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 111.0
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 110.3
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 108.4
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 107.6
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 107.1
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 106.6
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 103.3
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 68.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 68.1
FF:10158-103A5 76 years, female 68.1

MIDBRAIN - Pig RNA-seqi
Average nTPM 104.8
Pig sample Sample description nTPM
Substantia nigra
nTPM: 91.4
Samples: 4

Max nTPM: 122.2
Min nTPM: 68.9
Sample A Female 122.2
Sample B Female 68.9
Sample C Male 103.5
Sample D Male 71.1
Midbrain
nTPM: 97.4
Samples: 4

Max nTPM: 124.9
Min nTPM: 71.3
Sample A Female 124.9
Sample B Female 82.6
Sample C Male 110.9
Sample D Male 71.3
Periaqueductal gray
nTPM: 80.2
Samples: 3

Max nTPM: 95.2
Min nTPM: 69.4
Sample B Female 76.1
Sample C Male 95.2
Sample D Male 69.4
Superior colliculi
nTPM: 104.8
Samples: 4

Max nTPM: 121.9
Min nTPM: 87.6
Sample A Female 120.1
Sample B Female 87.6
Sample C Male 121.9
Sample D Male 89.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 131.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 131.7
Samples: 4

Max nTPM: 141.4
Min nTPM: 127.1
Sample A Male 130.0
Sample B Male 127.1
Sample C Female 128.4
Sample D Female 141.4

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 8.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 8.0
70192153 Antisense, RP_050517_01_D03, Mouse strain C57BL/6J (56 days, male) 8.0
71670705 Antisense, RP_050517_01_D03, Mouse strain C57BL/6J (56 days, male) 6.7

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