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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
HPA Brain:
102.5
nTPM
FANTOM5:
36.2
Scaled Tags Per Million
Pig:
3.6
nTPM
PONS - HPA Brain RNA-seq
Max nTPM
102.5
Sample id
Sample description
nTPM
Anterior cochlear nucleus, ventral nTPM: 100.0
2301
Female, age 85, both hemispheres
126.1
2090
Male, age 80, both hemispheres
119.4
2188
Female, age 91, both hemispheres
97.6
1984
Male, age 76, both hemispheres
56.8
Dorsal cochlear nucleus nTPM: 84.4
2378
Male, age 80, both hemispheres
92.6
2802
Male, age 74, right hemisphere
88.9
2187
Female, age 91, both hemispheres
84.1
2058
Male, age 76, both hemispheres
79.8
2370
Male, age 61, both hemispheres
76.6
Dorsal tegmental nucleus nTPM: 72.6
2083
Male, age 80, both hemispheres
91.8
2326
Male, age 74, both hemispheres
77.0
1936
Male, age 76, left hemisphere
74.2
2358
Male, age 61, both hemispheres
47.4
Dorsolateral tegmental area nTPM: 78.1
2751
Female, age 85, both hemispheres
104.6
2654
Male, age 80, both hemispheres
91.9
2337
Male, age 61, both hemispheres
88.5
2360
Male, age 74, both hemispheres
57.7
2141
Male, age 76, both hemispheres
48.0
Kolliker-Fuse nucleus nTPM: 76.9
2793
Female, age 91, left hemisphere
107.3
2163
Male, age 80, both hemispheres
75.7
2315
Male, age 76, right hemisphere
47.8
Lateral lemniscal nuclei nTPM: 87.4
2320
Female, age 91, left hemisphere
106.3
2746
Female, age 85, left hemisphere
105.9
2169
Male, age 76, both hemispheres
78.0
2036
Male, age 80, both hemispheres
75.9
2453
Male, age 74, right hemisphere
70.8
Lateral parabrachial nucleus nTPM: 85.1
2792
Male, age 76, both hemispheres
104.1
2013
Male, age 80, both hemispheres
102.7
2139
Female, age 85, right hemisphere
71.4
2790
Male, age 61, both hemispheres
62.1
Lateral vestibular nucleus nTPM: 94.7
2311
Male, age 80, both hemispheres
100.4
2184
Male, age 76, both hemispheres
88.9
Locus coeruleus nTPM: 41.9
2317
Female, age 72, unknown
50.3
2162
Male, age 80, both hemispheres
49.9
2720
Male, age 74, both hemispheres
43.7
2014
Male, age 55, unknown
40.5
2123
Female, age 91, both hemispheres
38.1
2788
Male, age 74, unknown
36.3
1980
Male, age 76, both hemispheres
34.4
Medial parabrachial nucleus nTPM: 88.4
2463
Female, age 85, right hemisphere
103.5
2170
Female, age 91, both hemispheres
97.9
2786
Male, age 76, both hemispheres
85.9
2854
Male, age 80, both hemispheres
80.7
2156
Male, age 61, both hemispheres
73.9
Medial periolivary nuclei nTPM: 82.9
2081
Male, age 80, both hemispheres
108.5
2458
Female, age 91, both hemispheres
86.1
2791
Male, age 74, right hemisphere
80.2
2171
Female, age 85, both hemispheres
71.1
2063
Male, age 76, both hemispheres
68.5
Motor facial nucleus nTPM: 85.0
2126
Male, age 61, both hemispheres
135.1
2697
Female, age 85, both hemispheres
95.3
2365
Male, age 74, right hemisphere
76.7
2795
Female, age 91, both hemispheres
69.6
2062
Male, age 76, both hemispheres
68.2
2327
Male, age 80, both hemispheres
65.2
Motor trigeminal nucleus nTPM: 89.2
2321
Female, age 91, both hemispheres
99.3
2560
Male, age 74, both hemispheres
97.2
2309
Male, age 76, both hemispheres
89.9
2335
Male, age 61, both hemispheres
84.5
2079
Male, age 80, both hemispheres
75.3
Nuclei of the trapezoid body nTPM: 80.9
2166
Male, age 80, both hemispheres
108.0
2159
Male, age 61, both hemispheres
94.1
2368
Female, age 91, both hemispheres
73.2
1983
Male, age 76, both hemispheres
66.3
2735
Female, age 85, both hemispheres
62.8
Nucleus raphe magnus nTPM: 69.7
2051
Male, age 76, both hemispheres
93.3
2328
Male, age 80, both hemispheres
81.8
2459
Female, age 91, both hemispheres
77.3
2455
Male, age 74, both hemispheres
70.5
2160
Male, age 61, both hemispheres
49.7
2172
Female, age 85, both hemispheres
45.5
Paramedian reticular nucleus nTPM: 78.9
2057
Male, age 80, both hemispheres
90.1
2052
Male, age 76, both hemispheres
87.7
2050
Female, age 85, both hemispheres
71.4
2313
Male, age 61, both hemispheres
66.4
Pedunculopontine tegmental nucleus nTPM: 67.8
2338
Male, age 61, both hemispheres
70.5
2334
Male, age 80, both hemispheres
69.2
1921
Female, age 85, both hemispheres
63.7
Pontine nuclei nTPM: 102.5
2115
Male, age 80, left hemisphere
122.0
2109
Female, age 72, unknown
118.4
1968
Male, age 76, left hemisphere
117.7
2319
Female, age 91, both hemispheres
116.5
2454
Male, age 74, left hemisphere
115.5
1863
Male, age 55, unknown
99.5
2787
Female, age 85, both hemispheres
67.5
2727
Male, age 61, right hemisphere
63.2
Pontine raphe nucleus nTPM: 57.3
2853
Male, age 76, midline
61.7
2122
Female, age 85, midline
52.9
Posteroventral cochlear nucleus nTPM: 99.4
2135
Female, age 91, both hemispheres
124.8
2341
Male, age 80, both hemispheres
116.8
2371
Male, age 61, both hemispheres
100.9
2070
Male, age 76, both hemispheres
98.3
2752
Female, age 85, both hemispheres
56.4
Principal sensory trigeminal nucleus nTPM: 78.2
2367
Female, age 91, left hemisphere
98.9
2324
Male, age 76, both hemispheres
79.4
2008
Male, age 80, left hemisphere
68.0
2158
Male, age 61, both hemispheres
66.5
Reticular pontine nucleus, caudal nTPM: 94.0
2559
Male, age 74, both hemispheres
118.0
2457
Female, age 91, both hemispheres
95.0
2092
Male, age 76, both hemispheres
91.3
2332
Male, age 80, right hemisphere
71.5
Reticular pontine nucleus, oral nTPM: 89.7
2366
Female, age 91, both hemispheres
98.9
2361
Male, age 74, both hemispheres
90.6
1939
Male, age 80, both hemispheres
87.4
2012
Female, age 85, both hemispheres
86.4
2167
Male, age 76, both hemispheres
85.3
Reticulotegmental nucleus nTPM: 73.1
2452
Male, age 74, both hemispheres
87.1
2333
Male, age 80, both hemispheres
74.4
2322
Female, age 91, both hemispheres
71.0
2325
Male, age 76, both hemispheres
59.8
Spinal trigeminal nucleus, oral nTPM: 76.1
2164
Male, age 80, both hemispheres
91.2
1978
Male, age 76, both hemispheres
79.7
2737
Female, age 85, both hemispheres
57.3
Subcoeruleus area nTPM: 81.2
2369
Female, age 85, left hemisphere
121.3
2089
Male, age 76, left hemisphere
86.7
2451
Male, age 74, both hemispheres
72.8
1958
Male, age 80, both hemispheres
69.0
2323
Female, age 91, left hemisphere
56.1
Superior olive nTPM: 88.6
2329
Male, age 80, right hemisphere
102.5
2020
Male, age 76, both hemispheres
100.9
2561
Female, age 91, both hemispheres
86.5
2364
Male, age 74, right hemisphere
82.3
1875
Female, age 85, both hemispheres
71.0
Ventral periolivary nuclei nTPM: 80.5
2023
Male, age 76, both hemispheres
103.4
2165
Male, age 80, both hemispheres
79.7
2794
Female, age 91, left hemisphere
73.7
2130
Female, age 85, both hemispheres
65.2
Ventrolateral tegmental area, A5 NE cell group nTPM: 82.0
2456
Female, age 91, both hemispheres
97.9
2161
Male, age 80, both hemispheres
84.0
1959
Male, age 76, both hemispheres
81.3
2359
Male, age 61, both hemispheres
79.5
2840
Female, age 85, both hemispheres
79.1
2449
Male, age 74, both hemispheres
70.0
PONS - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
The Human Protein Atlas project is funded
