We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
CHADL
SECTIONS
  • TISSUE
  • BRAIN
  • SINGLE CELL TYPE
  • TISSUE CELL TYPE
  • PATHOLOGY
  • DISEASE
  • IMMUNE CELL
  • BLOOD PROTEIN
  • SUBCELLULAR
  • CELL LINE
  • STRUCTURE
  • INTERACTION
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
  • SARS-COV-2
HELP
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • HELP & FAQ
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields ยป
Search result

 
Field
All
Term
Gene name
Class
Blood group antigen proteins
Subclass
 
Class
 
Keyword
Chromosome
External id
Tissue
 
Cell type
 
Expression
Patient ID
Tissue
Category
Cluster
Reliability
Brain region
Category
Brain region
Category
Brain region
Category
Cluster
Reliability
Cell type
Category
Cluster
Tissue
 
Cell type
Enrichment
Cancer
Prognosis
Cancer
Category
Cell type
Category
Cell lineage
Category
Cluster
Annotation
Disease
Location
Searches
Location
Cell line
Type
Phase
Reliability
Cancer type
Category
Cluster
Interacting gene
Number of interactions
Pathway
Category
Score
Score
Score
Validation
Validation
Validation
Validation
Antibodies
Yes
Protein structure
In atlas
Column
Gene


                        • SPECIFICITY
                        • DISTRIBUTION
                        • EXPRESSION
                        • SPECIFICITY
                        • DISTRIBUTION
                        • EXPRESSION
                        • SPECIFICITY
                        • DISTRIBUTION
                        • EXPRESSION
                        • SPECIFICITY
                        • DISTRIBUTION
                        • EXPRESSION
                        • SPECIFICITY
                        • DISTRIBUTION
                        • EXPRESSION
                          • SPECIFICITY
                          • DISTRIBUTION
                          • EXPRESSION
                          • SPECIFICITY
                          • DISTRIBUTION
                          • EXPRESSION
                          • SPECIFICITY
                          • DISTRIBUTION
                          • EXPRESSION
                          • RELIABILITY
                          • SUBCELLULAR VARIATION
                          • MULTILOCALIZATION
                          • OTHER
                          • SPECIFICITY
                          • DISTRIBUTION
                          • EXPRESSION
                          • Check all
                          • Uncheck all
                                  • SUMMARY

                                  • TISSUE

                                  • BRAIN

                                  • SINGLE CELL

                                  • TISSUE CELL

                                  • PATHOLOGY

                                  • DISEASE

                                  • IMMUNE

                                  • BLOOD

                                  • SUBCELL

                                  • CELL LINE

                                  • STRUCTURE

                                  • INTERACTION

                                  • CHADL
                                  BRAIN THALAMUS Show tissue menu
                                  AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
                                  MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
                                  ANTIBODIES
                                  AND
                                  VALIDATION
                                  Brain proteome
                                  Thalamus
                                  THALAMUS - Expression summary
                                  Protein expressioni

                                  On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

                                  Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

                                  If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

                                  No data
                                  RNA expressioni

                                  A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

                                  The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

                                  Scroll down to view mRNA expression data in more detail.
                                  HPA Brain:114.3 nTPM
                                  FANTOM5:42.7 Scaled Tags Per Million
                                  Pig:4.1 nTPM
                                  Mouse:2.9 nTPM

                                  THALAMUS - HPA Brain RNA-seq
                                  Max nTPM 114.3
                                  Sample id Sample description nTPM
                                  Anterior thalamic nucleus, ventral
                                  nTPM: 51.1
                                  2032 Female, age 42, unknown 61.0
                                  2396 Male, age 61, right hemisphere 46.1
                                  2497 Male, age 66, unknown 46.1
                                  Centromedial thalamic nucleus
                                  nTPM: 114.3
                                  2279 Female, age 85, left hemisphere 155.7
                                  2401 Male, age 76, right hemisphere 73.0
                                  Habenula
                                  nTPM: 33.1
                                  2276 Male, age 66, unknown 37.4
                                  2252 Male, age 62, unknown 36.5
                                  1957 Male, age 80, both hemispheres 29.7
                                  2203 Male, age 61, left hemisphere 28.9
                                  Lateral geniculate body
                                  nTPM: 74.7
                                  2575 Female, age 94, right hemisphere 115.9
                                  2841 Male, age 80, both hemispheres 106.2
                                  2035 Female, age 72, unknown 82.8
                                  2659 Male, age 66, unknown 71.0
                                  2106 Female, age 67, right hemisphere 60.9
                                  1953 Male, age 62, unknown 60.1
                                  2399 Male, age 61, left hemisphere 51.2
                                  2857 Male, age 74, right hemisphere 49.1
                                  Lateral thalamic nuclei
                                  nTPM: 69.6
                                  2765 Female, age 67, both hemispheres 100.5
                                  2573 Female, age 94, left hemisphere 83.0
                                  2661 Female, age 72, unknown 70.5
                                  2577 Male, age 74, both hemispheres 60.1
                                  1903 Male, age 76, left hemisphere 33.8
                                  Medial dorsal thalamic nucleus
                                  nTPM: 43.2
                                  2660 Female, age 72, unknown 90.8
                                  2576 Male, age 74, both hemispheres 59.5
                                  1859 Male, age 76, both hemispheres 52.8
                                  1930 Female, age 42, unknown 45.4
                                  2492 Male, age 75, right hemisphere 44.3
                                  1810 Male, age 48, unknown 41.1
                                  2026 Male, age 62, unknown 37.0
                                  2283 Male, age 80, right hemisphere 36.4
                                  2039 Female, age 72, unknown 35.9
                                  2572 Female, age 94, right hemisphere 31.5
                                  2402 Female, age 67, both hemispheres 30.8
                                  2498 Male, age 66, unknown 27.9
                                  1971 Male, age 61, right hemisphere 27.7
                                  Medial geniculate body
                                  nTPM: 52.7
                                  2571 Male, age 75, right hemisphere 83.6
                                  2217 Female, age 72, unknown 61.6
                                  2657 Male, age 74, right hemisphere 56.4
                                  2650 Female, age 94, left hemisphere 47.7
                                  2207 Male, age 80, right hemisphere 47.0
                                  2049 Male, age 76, both hemispheres 42.7
                                  1811 Female, age 42, unknown 30.2
                                  Nucleus reuniens
                                  nTPM: 83.0
                                  2210 Female, age 85, left hemisphere 141.2
                                  2205 Male, age 80, left hemisphere 71.5
                                  2212 Female, age 67, left hemisphere 36.2
                                  Nucleus rhomboideus
                                  nTPM: 74.0
                                  2280 Female, age 85, left hemisphere 135.4
                                  2213 Female, age 67, left hemisphere 56.3
                                  2206 Male, age 80, both hemispheres 30.4
                                  Posterior thalamic nucleus
                                  nTPM: 36.9
                                  2655 Male, age 74, right hemisphere 47.2
                                  2266 Male, age 76, right hemisphere 44.6
                                  2495 Female, age 67, right hemisphere 28.2
                                  2649 Female, age 94, both hemispheres 27.5
                                  Pulvinar
                                  nTPM: 52.1
                                  1972 Male, age 62, unknown 66.4
                                  2398 Male, age 61, left hemisphere 61.3
                                  1932 Male, age 80, right hemisphere 59.1
                                  2582 Female, age 72, unknown 58.1
                                  1899 Female, age 42, unknown 53.4
                                  2724 Male, age 74, right hemisphere 52.7
                                  2214 Male, age 76, right hemisphere 50.8
                                  1929 Male, age 48, unknown 47.2
                                  2499 Male, age 66, unknown 36.7
                                  2496 Female, age 67, right hemisphere 35.3
                                  Subthalamic nucleus
                                  nTPM: 94.2
                                  2056 Female, age 72, unknown 147.9
                                  2282 Male, age 61, both hemispheres 122.6
                                  2124 Male, age 62, unknown 121.8
                                  2216 Male, age 48, unknown 101.5
                                  2275 Male, age 66, unknown 80.8
                                  2779 Female, age 42, unknown 75.4
                                  2658 Male, age 74, both hemispheres 68.3
                                  2406 Female, age 72, unknown 35.1
                                  Ventral posterolateral thalamic nucleus
                                  nTPM: 72.5
                                  2581 Female, age 72, unknown 107.9
                                  2740 Male, age 76, right hemisphere 91.6
                                  2570 Male, age 75, right hemisphere 87.9
                                  2578 Male, age 74, both hemispheres 63.0
                                  2397 Male, age 61, right hemisphere 48.8
                                  2197 Male, age 80, both hemispheres 35.7
                                  Ventral posteromedial thalamic nucleus
                                  nTPM: 58.1
                                  2281 Male, age 75, right hemisphere 92.1
                                  2127 Male, age 76, right hemisphere 59.6
                                  2653 Male, age 74, both hemispheres 59.5
                                  2758 Male, age 80, both hemispheres 42.8
                                  2202 Male, age 61, left hemisphere 36.6
                                  Ventral thalamic nuclei
                                  nTPM: 68.9
                                  2858 Female, age 72, unknown 111.3
                                  2291 Female, age 72, unknown 88.8
                                  2652 Male, age 74, left hemisphere 80.0
                                  2580 Male, age 66, unknown 61.7
                                  1845 Male, age 48, unknown 61.4
                                  1860 Male, age 76, both hemispheres 60.1
                                  2204 Male, age 80, both hemispheres 54.9
                                  2285 Male, age 62, unknown 51.9
                                  1912 Female, age 42, unknown 49.7
                                  Zona incerta
                                  nTPM: 73.7
                                  2215 Male, age 66, unknown 95.7
                                  2822 Male, age 74, right hemisphere 82.3
                                  2663 Female, age 72, unknown 82.1
                                  2403 Male, age 62, unknown 71.5
                                  2208 Male, age 80, right hemisphere 36.8

                                  THALAMUS - FANTOM5 CAGEi

                                  RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

                                  Max Scaled Tags Per Million 42.7
                                  FANTOM5 sample id Sample description Scaled Tags Per Million
                                  Thalamus
                                  Scaled Tags Per Million: 42.7
                                  FF:10154-103A1 76 years, female 42.7

                                  THALAMUS - Pig RNA-seqi

                                  RNA-seq data obtained from pig brain is reported as nTPM .

                                  Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
                                  Average nTPM 4.1
                                  Pig sample Sample description nTPM
                                  2.73.14.51.83.3012345678
                                  2.73.14.51.83.3012345678
                                  Thalamus
                                  nTPM: 4.1
                                  Samples: 4

                                  Max nTPM: 8.2
                                  Min nTPM: 1.8
                                  Sample A Female 8.2
                                  Sample B Female 1.8
                                  Sample C Male 3.0
                                  Sample D Male 3.3

                                  THALAMUS - Mouse RNA-seqi

                                  RNA-seq data obtained from mouse brain is reported as nTPM .

                                  Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
                                  Average nTPM 2.9
                                  Mouse sample Sample description nTPM
                                  2.52.93.32.13.60.00.51.01.52.02.53.03.5
                                  2.52.93.32.13.60.00.51.01.52.02.53.03.5
                                  Thalamus
                                  nTPM: 2.9
                                  Samples: 4

                                  Max nTPM: 3.6
                                  Min nTPM: 2.1
                                  Sample A Male 3.6
                                  Sample B Male 2.1
                                  Sample C Female 3.2
                                  Sample D Female 2.6

                                  Contact

                                  • NEWS ARTICLES
                                  • PRESS ROOM

                                  The Project

                                  • INTRODUCTION
                                  • ORGANIZATION
                                  • PUBLICATIONS

                                  The Human Protein Atlas

                                  • DOWNLOADABLE DATA
                                  • LICENCE & CITATION
                                  • HELP & FAQ
                                  The Human Protein Atlas project is funded
                                  by the Knut & Alice Wallenberg Foundation.


                                  contact@proteinatlas.org